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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Afanasyev, P."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (26)
	Zea mays (1)

Taxonomy

Eukaryota (27)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (3)
	2.5 - 3.0 (4)

Release Date

	2010 - 2014 (13)
	2020 - 2024 (1)
	2025 - 2029 (13)

Enzyme Classification Name

	Hydrolases (17)
	Isomerases (14)
	Transferases (10)

Symmetry Type

	Asymmetric (23)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	Artifacts (1)

AllSelected

1 to 25 of 27 Structures

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4ALU \| pdb_00004alu	Download File View File

Benzofuropyrimidinone Inhibitors of Pim-1

Stout, T.J., Adams, L.

(2012) Bioorg Med Chem Lett 22: 3732

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE PIM-1 (protein)
Unique Ligands	79O, IMD

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4ALV \| pdb_00004alv	Download File View File

Benzofuropyrimidinone Inhibitors of Pim-1

Stout, T.J., Adams, L.

(2012) Bioorg Med Chem Lett 22: 3732

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE PIM-1 (protein)
Unique Ligands	IMD, R9P

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4ALW \| pdb_00004alw	Download File View File

Benzofuropyrimidinone Inhibitors of Pim-1

Stout, T.J., Adams, L.

(2012) Bioorg Med Chem Lett 22: 3732

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	PIM-1 KINASE (protein)
Unique Ligands	HY7, IMD

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4AN2 \| pdb_00004an2	Download File View File

Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.

Rice, K.D., Aay, N., Anand, N.K., Blazey, C.M., Bowles, O.J., Bussenius, J., Costanzo, S., Curtis, J.K., Defina, S.C., Dubenko, L., Engst, S., Joshi, A.A., Kennedy, A.R., Kim, A.I., Koltun, E.S., Lougheed, J.C., Manalo, J.C.L., Martini, J.F., Nuss, J.M., Peto, C.J., Tsang, T.H., Yu, P., Johnston, S.

(2012) ACS Med Chem Lett 3: 416

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 (protein)
Unique Ligands	ACP, EUI, MG

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4AN3 \| pdb_00004an3	Download File View File

Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.

(2012) ACS Med Chem Lett 3: 416

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 (protein)
Unique Ligands	5Y0, ATP, MG

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4AN9 \| pdb_00004an9	Download File View File

Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.

(2012) ACS Med Chem Lett 3: 416

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 (protein)
Unique Ligands	2P7, ACP, MG

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4ANB \| pdb_00004anb	Download File View File

Crystal structures of human MEK1 with carboxamide-based allosteric inhibitor XL518 (GDC-0973), or related analogs.

(2012) ACS Med Chem Lett 3: 416

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 (protein)
Unique Ligands	ACP, MG, YQY

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4ANM \| pdb_00004anm	Download File View File

Complex of CK2 with a CDC7 inhibitor

Stout, T.J.

(2012) Bioorg Med Chem Lett 22: 3727

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zea mays
Macromolecule	CASEIN KINASE II SUBUNIT ALPHA (protein)
Unique Ligands	WUL

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4AWO \| pdb_00004awo	Download File View File

Complex of HSP90 ATPase domain with tropane derived inhibitors

Lougheed, J.C., Stout, T.J.

(2012) Bioorg Med Chem Lett 22: 5396

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA (protein)
Unique Ligands	99B

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4AWP \| pdb_00004awp	Download File View File

Complex of HSP90 ATPase domain with tropane derived inhibitors

Lougheed, J.C., Stout, T.J.

(2012) Bioorg Med Chem Lett 22: 5396

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA (protein)
Unique Ligands	99A

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4AWQ \| pdb_00004awq	Download File View File

Complex of HSP90 ATPase domain with tropane derived inhibitors

Lougheed, J.C., Stout, T.J.

(2012) Bioorg Med Chem Lett 22: 5396

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	HEAT SHOCK PROTEIN HSP 90-ALPHA (protein)
Unique Ligands	592

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4BBE \| pdb_00004bbe	Download File View File

Aminoalkylpyrimidine Inhibitor Complexes with JAK2

Li, J.

(2012) Bioorg Med Chem Lett 22: 7653

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	TYROSINE-PROTEIN KINASE JAK2 (protein)
Unique Ligands	3O4

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4BBF \| pdb_00004bbf	Download File View File

Aminoalkylpyrimidine Inhibitor Complexes with JAK2

Li, J.

(2012) Bioorg Med Chem Lett 22: 7653

Released	2012-11-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	TYROSINE-PROTEIN KINASE JAK2 (protein)
Unique Ligands	O19

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9BG0 \| pdb_00009bg0	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), NRAS WT, and CypA

Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	GTPase NRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, GNP, MG

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9BG1 \| pdb_00009bg1	Download File View File

Tri-complex of Compound-3, KRAS G12V, and CypA

Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2024-06-12
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AOH, GNP, MG

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9BG2 \| pdb_00009bg2	Download File View File

Tri-complex of Compound-10, KRAS G12V, and CypA

Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AOJ, GNP, MG

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9BG3 \| pdb_00009bg3	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), NRAS Q61K, and CypA

Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Homo sapiens
Macromolecule	GTPase NRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, CL, GNP, MG

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9BG4 \| pdb_00009bg4	Download File View File

Tri-complex of Compound-2, KRAS G12V, and CypA

Tomlinson, A.C.A., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AOG, CL, GNP, MG

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9BG5 \| pdb_00009bg5	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), KRAS G13D, and CypA

Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, GNP, MG

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9BG6 \| pdb_00009bg6	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), KRAS G12V, and CypA

Tomlinson, A.C.A., Saldajeno-Concar, M., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, GNP, MG

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9BG7 \| pdb_00009bg7	Download File View File

Tri-complex of Compound-6, KRAS G12V, and CypA

Tomlinson, A.C.A., Saldajeno-Concar, M., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2B of GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AOI, GNP, MG

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9BG8 \| pdb_00009bg8	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), NRAS Q61R, and CypA

Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	GTPase NRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, BTB, GNP, MG

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9BG9 \| pdb_00009bg9	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), KRAS WT, and CypA

Tomlinson, A.C.A., Saldajeno-Concar, M., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, GNP, MG

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9BGA \| pdb_00009bga	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), KRAS G12C, and CypA

Chen, A., Tomlinson, A.C.A., Bieder, R., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, GNP, MG

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9BGB \| pdb_00009bgb	Download File View File

Tri-complex of Daraxonrasib (RMC-6236), KRAS Q61H, and CypA

Tomlinson, A.C.A., Bieder, R., Chen, A., Knox, J.E., Yano, J.K.

(2025) J Med Chem

Released	2025-03-19
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	A1AHB, GNP, MG

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4ALU | pdb_00004alu

4ALV | pdb_00004alv

4ALW | pdb_00004alw

4AN2 | pdb_00004an2

4AN3 | pdb_00004an3

4AN9 | pdb_00004an9

4ANB | pdb_00004anb

4ANM | pdb_00004anm

4AWO | pdb_00004awo

4AWP | pdb_00004awp

4AWQ | pdb_00004awq

4BBE | pdb_00004bbe

4BBF | pdb_00004bbf

9BG0 | pdb_00009bg0

9BG1 | pdb_00009bg1

9BG2 | pdb_00009bg2

9BG3 | pdb_00009bg3

9BG4 | pdb_00009bg4

9BG5 | pdb_00009bg5

9BG6 | pdb_00009bg6

9BG7 | pdb_00009bg7

9BG8 | pdb_00009bg8

9BG9 | pdb_00009bg9

9BGA | pdb_00009bga

9BGB | pdb_00009bgb