RCSB PDB: Search

1O5A \| pdb_00001o5a	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	696, CIT

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1O5B \| pdb_00001o5b	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	CIT, ESI

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1O5C \| pdb_00001o5c	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	CIT, CR9

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1O5D \| pdb_00001o5d	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	CR9

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1O5E \| pdb_00001o5e	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	132

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1O5F \| pdb_00001o5f	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	CR9

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1O5G \| pdb_00001o5g	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	Hirudin IIIB' (protein) Prothrombin (protein)
Unique Ligands	CA, CR9, NA

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2ANW \| pdb_00002anw	Download File View File

Expression, crystallization and three-dimensional structure of the catalytic domain of human plasma kallikrein: Implications for structure-based design of protease inhibitors

Tang, J., Yu, C.L., Williams, S.R., Springman, E., Jeffery, D., Sprengeler, P.A., Estevez, A., Sampang, J., Shrader, W., Spencer, J.R., Young, W.B., McGrath, M.E., Katz, B.A.

(2005) J Biological Chem 280: 41077-41089

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	plasma kallikrein, light chain (protein)
Unique Ligands	BEN

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2ANY \| pdb_00002any	Download File View File

Expression, Crystallization and the Three-dimensional Structure of the Catalytic Domain of Human Plasma Kallikrein: Implications for Structure-Based Design of Protease Inhibitors

Tang, J., Yu, C.L., Williams, S.R., Springman, E., Jeffery, D., Sprengeler, P.A., Estevez, A., Sampang, J., Shrader, W., Spencer, J.R., Young, W.B., McGrath, M.E., Katz, B.A.

(2005) J Biological Chem 280: 41077-41089

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	plasma kallikrein, light chain (protein)
Unique Ligands	BEN, PO4

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2B7D \| pdb_00002b7d	Download File View File

Factor VIIa Inhibitors: Chemical Optimization, Preclinical Pharmacokinetics, Pharmacodynamics, and Efficacy in a Baboon Thrombosis Model

Young, W.B., Mordenti, J., Torkelson, S., Shrader, W.D., Kolesnikov, A., Rai, R., Liu, L., Hu, H., Leahy, E.M., Green, M.J., Sprengeler, P.A., Katz, B.A., Yu, C., Janc, J.W., Elrod, K.C., Marzec, U.M., Hanson, S.R.

(2006) Bioorg Med Chem Lett 16: 2037-2041

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	C1B

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2F9B \| pdb_00002f9b	Download File View File

Discovery of Novel Heterocyclic Factor VIIa Inhibitors

Rai, R., Kolesnikov, A., Sprengeler, P.A., Torkelson, S., Ton, T., Katz, B.A., Yu, C., Hendrix, J., Shrader, W.D., Stephens, R., Cabuslay, R., Sanford, E., Young, W.B.

(2006) Bioorg Med Chem Lett 16: 2270-2273

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	N1H

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2FLR \| pdb_00002flr	Download File View File

Novel 5-Azaindole Factor VIIa Inhibitors

Riggs, J.R., Hu, H., Kolesnikov, A., Tong, Z., Leahy, E.M., Wesson, K.E., Shrader, W.D., Vijaykumar, D., Wahl, T.A., Sprengeler, P.A., Green, M.J., Yu, C., Katz, B.A., Young, W.B.

(2006) Bioorg Med Chem Lett 16: 3197-3200

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	7NH

1O5A | pdb_00001o5a

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5B | pdb_00001o5b

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5C | pdb_00001o5c

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5D | pdb_00001o5d

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5E | pdb_00001o5e

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5F | pdb_00001o5f

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5G | pdb_00001o5g

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

2ANW | pdb_00002anw

Expression, crystallization and three-dimensional structure of the catalytic domain of human plasma kallikrein: Implications for structure-based design of protease inhibitors

2ANY | pdb_00002any

Expression, Crystallization and the Three-dimensional Structure of the Catalytic Domain of Human Plasma Kallikrein: Implications for Structure-Based Design of Protease Inhibitors

2B7D | pdb_00002b7d

Factor VIIa Inhibitors: Chemical Optimization, Preclinical Pharmacokinetics, Pharmacodynamics, and Efficacy in a Baboon Thrombosis Model

2F9B | pdb_00002f9b

Discovery of Novel Heterocyclic Factor VIIa Inhibitors

2FLR | pdb_00002flr

Novel 5-Azaindole Factor VIIa Inhibitors

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1O5A | pdb_00001o5a

1O5B | pdb_00001o5b

1O5C | pdb_00001o5c

1O5D | pdb_00001o5d

1O5E | pdb_00001o5e

1O5F | pdb_00001o5f

1O5G | pdb_00001o5g

2ANW | pdb_00002anw

2ANY | pdb_00002any

2B7D | pdb_00002b7d

2F9B | pdb_00002f9b

2FLR | pdb_00002flr