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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yang, A."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	synthetic construct (12)
	Staphylococcus aureus (10)
	Homo sapiens (6)
	Avian infectious bronchitis virus (strain M41) (1)
	Saccharomyces cerevisiae S288C (1)

Taxonomy

	other sequences (12)
	Bacteria (10)
	Eukaryota (7)
	Eukaryota (eukaryotes) (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (4)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (19)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (2)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (3)
	Hydrolases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (18)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 19 of 19 Structures

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1ZMZ \| pdb_00001zmz	Download File View File

Solution structure of the N-terminal domain (M1-S98) of human centrin 2

Yang, A., Miron, S., Duchambon, P., Assairi, L., Blouquit, Y., Craescu, C.T.

(2006) Biochemistry 45: 880-889

Released	2006-04-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Centrin-2 (protein)

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2A4J \| pdb_00002a4j	Download File View File

Solution structure of the C-terminal domain (T94-Y172) of the human centrin 2 in complex with a 17 residues peptide (P1-XPC) from xeroderma pigmentosum group C protein

Yang, A., Miron, S., Mouawad, L., Duchambon, P., Blouquit, Y., Craescu, C.T.

(2006) Biochemistry 45: 3653-3663

Released	2005-07-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	17-mer peptide P1-XPC from DNA-repair protein complementing XP-C cells (protein) Centrin 2 (protein)

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2K7L \| pdb_00002k7l	Download File View File

NMR structure of a complex formed by the C-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1

Yang, A., Abbott, K.L., Desjardins, A., Di Lello, P., Omichinski, J.G., Legault, P.

(2009) Biochemistry 48: 1964-1974

Released	2009-06-02
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	General transcription factor IIF subunit 1 (protein) centFCP1-T584PO4 peptide (protein)

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3LD1 \| pdb_00003ld1	Download File View File

Crystal Structure of IBV Nsp2a

Xu, Y., Cong, L., Wei, L., Fu, J., Chen, C., Yang, A., Tang, H., Bartlam, M., Rao, Z.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.498 Å
Organisms	Avian infectious bronchitis virus (strain M41)
Macromolecule	Replicase polyprotein 1a (protein)

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4APP \| pdb_00004app	Download File View File

Crystal Structure of the Human p21-Activated Kinase 4 in Complex with (S)-N-(5-(3-benzyl-1-methylpiperazine-4-carbonyl)-6,6-dimethyl-1,4,5, 6-tetrahydropyrrolo(3,4-c)pyrazol-3-yl)-3-phenoxybenzamide

Knighton, D.D., Deng, Y.L., Wang, C., Guo, C., McAlpine, I., Zhang, J., Kephart, S., Johnson, M.C., Li, H., Bouzida, D., Yang, A., Dong, L., Marakovits, J., Tikhe, J., Richardson, P., Guo, L.C., Kania, R., Edwards, M.P., Kraynov, E., Christensen, J., Piraino, J., Lee, J., Dagostino, E., Del-Carmen, C., Smeal, T., Murray, B.W.

(2012) J Med Chem 55: 4728

Released	2012-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE PAK 4 (protein)
Unique Ligands	GOL, N53

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7LH9 \| pdb_00007lh9	Download File View File

Crystal structure of BRPF2 PWWP domain in complex with DNA

Zhang, M., Lei, M., Qin, S., Dong, A., Yang, A., Li, Y., Loppnau, P., Hughes, T.R., Arrowsmith, C.H., Edwards, A.M., Min, J., Liu, J., Structural Genomics Consortium (SGC)

(2021) Biochim Biophys Acta Gene Regul Mech 1864: 194688-194688

Released	2021-02-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Bromodomain-containing protein 1 (protein) DNA (nucleic acid)

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8DA3 \| pdb_00008da3	Download File View File

Coevolved affibody-Z domain pair LL1.c1

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL1.FILF (protein) Immunoglobulin G-binding protein A (protein)
Unique Ligands	MLI, SO4

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8DA4 \| pdb_00008da4	Download File View File

Coevolved affibody-Z domain pair LL1.c2

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL1.FIVM (protein) Immunoglobulin G-binding protein A (protein) affibody LL1.FIVM (protein)
Unique Ligands	SO4

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8DA5 \| pdb_00008da5	Download File View File

Coevolved affibody-Z domain pair LL1.c4

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Immunoglobulin G-binding protein A (protein) affibody LL1.FIVM (protein)
Unique Ligands	GOL

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8DA6 \| pdb_00008da6	Download File View File

Coevolved affibody-Z domain pair LL1.c5

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL1.FIIM (protein) Immunoglobulin G-binding protein A (protein)

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8DA7 \| pdb_00008da7	Download File View File

Coevolved affibody-Z domain pair LL1.c6

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Immunoglobulin G-binding protein A (protein) affibody LL1.FIFV (protein)
Unique Ligands	MLI

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8DA8 \| pdb_00008da8	Download File View File

Coevolved affibody-Z domain pair LL2.c1

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL2.FIIK (protein) Immunoglobulin G-binding protein A (protein)
Unique Ligands	GOL

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8DA9 \| pdb_00008da9	Download File View File

Coevolved affibody-Z domain pair LL2.c3

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL2.FIIV (protein) Immunoglobulin G-binding protein A (protein)
Unique Ligands	GOL, SO4

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8DAA \| pdb_00008daa	Download File View File

Coevolved affibody-Z domain pair LL2.c7

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL2.FIVK (protein) Immunoglobulin G-binding protein A (protein)
Unique Ligands	MLI

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8DAB \| pdb_00008dab	Download File View File

Coevolved affibody-Z domain pair LL2.c17

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.134 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL2.IVVY (protein) Immunoglobulin G-binding protein A (protein)

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8DAC \| pdb_00008dac	Download File View File

Coevolved affibody-Z domain pair LL2.c22

Jude, K.M., Yang, A., Garcia, K.C.

(2023) Science 381: eadh1720-eadh1720

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	Affibody LL2.FILV (protein) Immunoglobulin G-binding protein A (protein)
Unique Ligands	GOL

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8HF3 \| pdb_00008hf3	Download File View File

Cryo-EM structure of human ZDHHC9/GCP16 complex

Wu, J., Hu, Q., Zhang, Y., Liu, S., Yang, A.

(2024) Nat Struct Mol Biol 31: 436-446

Released	2023-11-22
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Golgin subfamily A member 7 (protein) Palmitoyltransferase ZDHHC9 (protein)
Unique Ligands	PLM, PX2, ZN

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8HFC \| pdb_00008hfc	Download File View File

Cryo-EM structure of yeast Erf2/Erf4 complex

Wu, J., Hu, Q., Zhang, Y., Yang, A., Liu, S.

(2024) Nat Struct Mol Biol 31: 436-446

Released	2023-11-22
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Palmitoyltransferase ERF2 (protein) Ras modification protein ERF4 (protein)
Unique Ligands	PLM, ZN

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8HVS \| pdb_00008hvs	Download File View File

Solution Structure of the Antimicrobial Peptide HT-2

Li, S., Yang, A.

(2023) Commun Biol 6: 1177-1177

Released	2023-10-25
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	ARG-PHE-LEU-ARG-ARG-ILE-PHE-PHE-PHE-PHE (protein)

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ZMZ | pdb_00001zmz

Solution structure of the N-terminal domain (M1-S98) of human centrin 2

2A4J | pdb_00002a4j

Solution structure of the C-terminal domain (T94-Y172) of the human centrin 2 in complex with a 17 residues peptide (P1-XPC) from xeroderma pigmentosum group C protein

2K7L | pdb_00002k7l

NMR structure of a complex formed by the C-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1

3LD1 | pdb_00003ld1

Crystal Structure of IBV Nsp2a

4APP | pdb_00004app

Crystal Structure of the Human p21-Activated Kinase 4 in Complex with (S)-N-(5-(3-benzyl-1-methylpiperazine-4-carbonyl)-6,6-dimethyl-1,4,5, 6-tetrahydropyrrolo(3,4-c)pyrazol-3-yl)-3-phenoxybenzamide

7LH9 | pdb_00007lh9

Crystal structure of BRPF2 PWWP domain in complex with DNA

8DA3 | pdb_00008da3

Coevolved affibody-Z domain pair LL1.c1

8DA4 | pdb_00008da4

Coevolved affibody-Z domain pair LL1.c2

8DA5 | pdb_00008da5

Coevolved affibody-Z domain pair LL1.c4

8DA6 | pdb_00008da6

Coevolved affibody-Z domain pair LL1.c5

8DA7 | pdb_00008da7

Coevolved affibody-Z domain pair LL1.c6

8DA8 | pdb_00008da8

Coevolved affibody-Z domain pair LL2.c1

8DA9 | pdb_00008da9

Coevolved affibody-Z domain pair LL2.c3

8DAA | pdb_00008daa

Coevolved affibody-Z domain pair LL2.c7

8DAB | pdb_00008dab

Coevolved affibody-Z domain pair LL2.c17

8DAC | pdb_00008dac

Coevolved affibody-Z domain pair LL2.c22

8HF3 | pdb_00008hf3

Cryo-EM structure of human ZDHHC9/GCP16 complex

8HFC | pdb_00008hfc

Cryo-EM structure of yeast Erf2/Erf4 complex

8HVS | pdb_00008hvs

Solution Structure of the Antimicrobial Peptide HT-2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ZMZ | pdb_00001zmz

2A4J | pdb_00002a4j

2K7L | pdb_00002k7l

3LD1 | pdb_00003ld1

4APP | pdb_00004app

7LH9 | pdb_00007lh9

8DA3 | pdb_00008da3

8DA4 | pdb_00008da4

8DA5 | pdb_00008da5

8DA6 | pdb_00008da6

8DA7 | pdb_00008da7

8DA8 | pdb_00008da8

8DA9 | pdb_00008da9

8DAA | pdb_00008daa

8DAB | pdb_00008dab

8DAC | pdb_00008dac

8HF3 | pdb_00008hf3

8HFC | pdb_00008hfc

8HVS | pdb_00008hvs