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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Xu, R.G."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Thermus phage G20c (7)
	Deep-sea thermophilic phage D6E (5)

Taxonomy

Duplodnaviria (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)

Release Date

2015 - 2019 (12)

Enzyme Classification Name

Hydrolases (6)

Symmetry Type

Asymmetric (12)

AllSelected

1 to 12 of 12 Structures

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5M1F \| pdb_00005m1f	Download File View File

Crystal structure of the large terminase nuclease from thermophilic phage G20c

Xu, R.G., Jenkins, H.T., Chechik, M., Blagova, E.V., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 3580-3590

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Thermus phage G20c
Macromolecule	Phage terminase large subunit (protein)

Explore in 3D

5M1K \| pdb_00005m1k	Download File View File

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Magnesium

Xu, R.G., Jenkins, H.T., Chechik, M., Blagova, E.V., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 3580-3590

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Thermus phage G20c
Macromolecule	Phage terminase large subunit (protein)
Unique Ligands	BTB, MG, SO4

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5M1N \| pdb_00005m1n	Download File View File

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Manganese

Xu, R.G., Jenkins, H.T., Chechik, M., Blagova, E.V., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 3580-3590

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Thermus phage G20c
Macromolecule	Phage terminase large subunit (protein)
Unique Ligands	BTB, MN, SO4

Explore in 3D

5M1O \| pdb_00005m1o	Download File View File

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Cobalt

Xu, R.G., Jenkins, H.T., Chechik, M., Blagova, E.V., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 3580-3590

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermus phage G20c
Macromolecule	Phage terminase large subunit (protein)
Unique Ligands	CO

Explore in 3D

5M1P \| pdb_00005m1p	Download File View File

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium

Xu, R.G., Jenkins, H.T., Chechik, M., Blagova, E.V., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 3580-3590

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Thermus phage G20c
Macromolecule	Terminase large subunit (protein)
Unique Ligands	CA

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5M1Q \| pdb_00005m1q	Download File View File

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Zinc

Xu, R.G., Jenkins, H.T., Chechik, M., Blagova, E.V., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 3580-3590

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Thermus phage G20c
Macromolecule	Phage terminase large subunit (protein)
Unique Ligands	ZN

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5OE8 \| pdb_00005oe8	Download File View File

Structure of large terminase from the thermophilic bacteriophage D6E (Crystal form 2)

Xu, R.G., Jenkins, H.T., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 13029-13042

Released	2017-10-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Deep-sea thermophilic phage D6E
Macromolecule	Large subunit terminase (protein)
Unique Ligands	CL

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5OE9 \| pdb_00005oe9	Download File View File

Structure of large terminase from the thermophilic bacteriophage D6E in complex with sulfate (Crystal form 2)

Xu, R.G., Jenkins, H.T., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 13029-13042

Released	2017-10-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Deep-sea thermophilic phage D6E
Macromolecule	Large subunit terminase (protein)
Unique Ligands	SO4

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5OEA \| pdb_00005oea	Download File View File

Structure of large terminase from the thermophilic bacteriophage D6E in complex with ATP-gamma-S (Crystal form 3)

Xu, R.G., Jenkins, H.T., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 13029-13042

Released	2017-10-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Deep-sea thermophilic phage D6E
Macromolecule	Large subunit terminase (protein)
Unique Ligands	AGS, MG

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5OEB \| pdb_00005oeb	Download File View File

Structure of large terminase from the thermophilic bacteriophage D6E in complex with ADP (Crystal form 3)

Xu, R.G., Jenkins, H.T., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 13029-13042

Released	2017-10-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Deep-sea thermophilic phage D6E
Macromolecule	Large subunit terminase (protein)
Unique Ligands	ADP, MG

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5OEE \| pdb_00005oee	Download File View File

Structure of large terminase from the thermophilic bacteriophage D6E (Crystal form 3)

Xu, R.G., Jenkins, H.T., Greive, S.J., Antson, A.A.

(2017) Nucleic Acids Res 45: 13029-13042

Released	2017-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Deep-sea thermophilic phage D6E
Macromolecule	Large subunit terminase (protein)
Unique Ligands	NA

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6EJQ \| pdb_00006ejq	Download File View File

Crystal structure of a C-terminally truncated small terminase protein from the thermophilic bacteriophage G20c

Xu, R.G., Loredo-Varela, J., Jenkins, H.T., Antson, A.A.

To be published

Released	2018-10-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus phage G20c
Macromolecule	Terminase small subunit (protein)

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5M1F | pdb_00005m1f

Crystal structure of the large terminase nuclease from thermophilic phage G20c

5M1K | pdb_00005m1k

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Magnesium

5M1N | pdb_00005m1n

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Manganese

5M1O | pdb_00005m1o

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Cobalt

5M1P | pdb_00005m1p

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium

5M1Q | pdb_00005m1q

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Zinc

5OE8 | pdb_00005oe8

Structure of large terminase from the thermophilic bacteriophage D6E (Crystal form 2)

5OE9 | pdb_00005oe9

Structure of large terminase from the thermophilic bacteriophage D6E in complex with sulfate (Crystal form 2)

5OEA | pdb_00005oea

Structure of large terminase from the thermophilic bacteriophage D6E in complex with ATP-gamma-S (Crystal form 3)

5OEB | pdb_00005oeb

Structure of large terminase from the thermophilic bacteriophage D6E in complex with ADP (Crystal form 3)

5OEE | pdb_00005oee

Structure of large terminase from the thermophilic bacteriophage D6E (Crystal form 3)

6EJQ | pdb_00006ejq

Crystal structure of a C-terminally truncated small terminase protein from the thermophilic bacteriophage G20c

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5M1F | pdb_00005m1f

5M1K | pdb_00005m1k

5M1N | pdb_00005m1n

5M1O | pdb_00005m1o

5M1P | pdb_00005m1p

5M1Q | pdb_00005m1q

5OE8 | pdb_00005oe8

5OE9 | pdb_00005oe9

5OEA | pdb_00005oea

5OEB | pdb_00005oeb

5OEE | pdb_00005oee

6EJQ | pdb_00006ejq