RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Walse, B."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Homo sapiens (18)
	Rhodothermus marinus (6)
	Chromobacterium violaceum (5)
	Staphylococcus aureus (2)
	Chromobacterium violaceum ATCC 12472 (1)
	Influenza A virus (strain A/Equine/Jillin/1/1989 H3N8) (1)

Taxonomy

	Eukaryota (18)
	Bacteria (14)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (14)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (11)
	2015 - 2019 (8)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (11)
	Oxidoreductases (6)
	Hydrolases (6)

Membrane Protein Annotation

mpstruc (3)

Symmetry Type

	Asymmetric (21)
	Cyclic (9)

SCOP Classification

	Alpha and beta proteins (a/b) (12)
	All beta proteins (9)
	Artifacts (9)
	Alpha and beta proteins (a+b) (4)
	All alpha proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 30 Structures

Page 1 of 2

Sort by

Explore in 3D

1HXY \| pdb_00001hxy	Download File View File

CRYSTAL STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN H IN COMPLEX WITH HUMAN MHC CLASS II

Petersson, K., Hakansson, M., Nilsson, H., Forsberg, G., Svensson, L.A., Liljas, A., Walse, B.

(2001) EMBO J 20: 3306-3312

Released	2001-06-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Influenza A virus (strain A/Equine/Jillin/1/1989 H3N8) Staphylococcus aureus
Macromolecule	ENTEROTOXIN H (protein) HEMAGGLUTININ (protein) HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN (protein) HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN (protein)
Unique Ligands	ZN

Explore in 3D

1LO5 \| pdb_00001lo5	Download File View File

Crystal structure of the D227A variant of Staphylococcal enterotoxin A in complex with human MHC class II

Petersson, K., Thunnissen, M., Forsberg, G., Walse, B.

(2002) Structure 10: 1619-1626

Released	2002-12-18
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DR-1 beta chain (protein) Hemagglutinin peptide (protein) enterotoxin A (protein)

Explore in 3D

2PRH \| pdb_00002prh	Download File View File

The structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site

Walse, B., Dufe, V.T., Al-Karadaghi, S.

(2008) Biochemistry 47: 8929-8936

Released	2008-05-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Dihydroorotate dehydrogenase, mitochondrial (protein)
Unique Ligands	238, DDQ, FMN, ORO

Explore in 3D

2PRL \| pdb_00002prl	Download File View File

The structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site

Walse, B., Dufe, V.T., Al-Karadaghi, S.

(2008) Biochemistry 47: 8929-8936

Released	2008-05-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Dihydroorotate dehydrogenase, mitochondrial (protein)
Unique Ligands	ACT, DDQ, FMN, ORO, R2C, SO4

Explore in 3D

2PRM \| pdb_00002prm	Download File View File

The structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site

Walse, B., Dufe, V.T., Al-Karadaghi, S.

(2008) Biochemistry 47: 8929-8936

Released	2008-05-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Dihydroorotate dehydrogenase, mitochondrial (protein)
Unique Ligands	FMN, ORO

Explore in 3D

2WV8 \| pdb_00002wv8	Download File View File

Complex of human dihydroorotate dehydrogenase with the inhibitor 221290

Walse, B., Svensson, B., Fritzson, I., Dahlberg, L., Wellmar, U., Al-Karadaghi, S.

(2010) ChemMedChem 5: 608

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DIHYDROOROTATE DEHYDROGENASE, MITOCHONDRIAL (protein)
Unique Ligands	ACT, DDQ, FMN, ORO, SO4, VGN

Explore in 3D

2Y64 \| pdb_00002y64	Download File View File

Xylopentaose binding mutated (X-2 L110F) CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

von Schantz, L., Hakansson, M., Logan, D.T., Walse, B., Osterlin, J., Nordberg-Karlsson, E., Ohlin, M.

(2012) Glycobiology 22: 948-961

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Rhodothermus marinus
Macromolecule	XYLANASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	XYP

Explore in 3D

2Y6G \| pdb_00002y6g	Download File View File

Cellopentaose binding mutated (X-2 L110F) CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

von Schantz, L., Hakansson, M., Logan, D.T., Walse, B., Osterlin, J., Nordberg-Karlsson, E., Ohlin, M.

(2012) Glycobiology 22: 948-961

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Rhodothermus marinus
Macromolecule	XYLANASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC

Explore in 3D

2Y6H \| pdb_00002y6h	Download File View File

X-2 L110F CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

von Schantz, L., Hakansson, M., Logan, D.T., Walse, B., Osterlin, J., Nordberg-Karlsson, E., Ohlin, M.

(2012) Glycobiology 22: 948-961

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Rhodothermus marinus
Macromolecule	XYLANASE (protein)
Unique Ligands	CA

Explore in 3D

2Y6J \| pdb_00002y6j	Download File View File

X-2 engineered mutated CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

von Schantz, L., Hakansson, M., Logan, D.T., Walse, B., Osterlin, J., Nordberg-Karlsson, E., Ohlin, M.

(2012) Glycobiology 22: 948-961

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Rhodothermus marinus
Macromolecule	XYLANASE (protein)
Unique Ligands	CA

Explore in 3D

2Y6K \| pdb_00002y6k	Download File View File

Xylotetraose bound to X-2 engineered mutated CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

von Schantz, L., Hakansson, M., Logan, D.T., Walse, B., Osterlin, J., Nordberg-Karlsson, E., Ohlin, M.

(2012) Glycobiology 22: 948-961

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Rhodothermus marinus
Macromolecule	XYLANASE (protein)
Unique Ligands	CA, CIT
Unique branched monosaccharides	XYP

Explore in 3D

2Y6L \| pdb_00002y6l	Download File View File

Xylopentaose binding X-2 engineered mutated CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase

von Schantz, L., Hakansson, M., Logan, D.T., Walse, B., Osterlin, J., Nordberg-Karlsson, E., Ohlin, M.

(2012) Glycobiology 22: 948-961

Released	2012-03-07
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Rhodothermus marinus
Macromolecule	XYLANASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	XYP

Explore in 3D

4A6R \| pdb_00004a6r	Download File View File

Crystal structure of the omega transaminase from Chromobacterium violaceum in the apo form, crystallised from polyacrylic acid

Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

(2012) FEBS J 279: 779

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.349 Å
Organisms	Chromobacterium violaceum
Macromolecule	OMEGA TRANSAMINASE (protein)
Unique Ligands	TA8

Explore in 3D

4A6T \| pdb_00004a6t	Download File View File

Crystal structure of the omega transaminase from Chromobacterium violaceum in complex with PLP

Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

(2012) FEBS J 279: 779

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Chromobacterium violaceum
Macromolecule	OMEGA TRANSAMINASE (protein)
Unique Ligands	PLP

Explore in 3D

4A6U \| pdb_00004a6u	Download File View File

Crystal structure of the omega transaminase from Chromobacterium violaceum in the apo form, crystallised from PEG 3350

Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

(2012) FEBS J 279: 779

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.687 Å
Organisms	Chromobacterium violaceum
Macromolecule	OMEGA TRANSAMINASE (protein)
Unique Ligands	NA, SCN

Explore in 3D

4A72 \| pdb_00004a72	Download File View File

Crystal structure of the omega transaminase from Chromobacterium violaceum in a mixture of apo and PLP-bound states

Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

(2012) FEBS J 279: 779

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Chromobacterium violaceum
Macromolecule	OMEGA TRANSAMINASE (protein)
Unique Ligands	PLP

Explore in 3D

5A6N \| pdb_00005a6n	Download File View File

Crystal structure of human death associated protein kinase 3 (DAPK3) in complex with compound 2

Rodrigues, T., Reker, D., Welin, M., Caldera, M., Brunner, C., Gabernet, G., Schneider, P., Walse, B., Schneider, G.

(2015) Angew Chem Int Ed Engl 54: 15079

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DEATH-ASSOCIATED PROTEIN KINASE 3 (protein)
Unique Ligands	GOL, PGO, U7E

Explore in 3D

5A6O \| pdb_00005a6o	Download File View File

Crystal structure of the apo form of the unphosphorylated human death associated protein kinase 3 (DAPK3)

Rodrigues, T., Reker, D., Welin, M., Caldera, M., Brunner, C., Gabernet, G., Schneider, P., Walse, B., Schneider, G.

(2015) Angew Chem Int Ed Engl 54: 15079

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DEATH-ASSOCIATED PROTEIN KINASE 3 (protein)
Unique Ligands	GOL, PGO

Explore in 3D

5A7C \| pdb_00005a7c	Download File View File

Crystal structure of the second bromodomain of human BRD3 in complex with compound

Welin, M., Kimbung, R., Diehl, C., Hakansson, M., Logan, D.T., Walse, B.

(2016) Cancer Res 76: 2376

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	BROMODOMAIN-CONTAINING PROTEIN 3 (protein)
Unique Ligands	5D4, EDO

Explore in 3D

5MPR \| pdb_00005mpr	Download File View File

Single Amino Acid Variant of Human Mitochondrial Branched Chain Amino Acid Aminotransferase 2

Hakansson, M., Walse, B., Nilsson, C., Anderson, L.C.

(2017) J Am Soc Mass Spectrom 28: 1796-1804

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Branched-chain-amino-acid aminotransferase, mitochondrial (protein)
Unique Ligands	EDO, PLP

Explore in 3D

6ET4 \| pdb_00006et4	Download File View File

HUMAN DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH NOVEL INHIBITOR

Hakansson, M., Walse, B., Gustavsson, A.-L., Lain, S.

(2018) Nat Commun 9: 1107-1107

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Dihydroorotate dehydrogenase (quinone), mitochondrial (protein)
Unique Ligands	ACY, CL, DDQ, DOR, FMN, GOL, SDV, SO4

Explore in 3D

6GK0 \| pdb_00006gk0	Download File View File

HUMAN DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH CLASS III HISTONE DEACETYLASE INHIBITOR

Hakansson, M., Ladds, M.J.G.W., Walse, B., Lain, S.

(2020) J Biological Chem 295: 17935-17949

Released	2019-11-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Dihydroorotate dehydrogenase (quinone), mitochondrial (protein)
Unique Ligands	ACY, CL, DDQ, DOR, F1W, FMN, GOL, SO4

Explore in 3D

6S4G \| pdb_00006s4g	Download File View File

Crystal structure of the omega transaminase from Chromobacterium violaceum in complex with PMP

Ruggieri, F., Campillo Brocal, J.C., Humble, M.S., Walse, B., Logan, D.T., Berglund, P.

(2019) Sci Rep 9: 16946-16946

Released	2019-07-17
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Chromobacterium violaceum ATCC 12472
Macromolecule	Probable aminotransferase (protein)
Unique Ligands	EDO, PEG, PMP

Explore in 3D

6SNU \| pdb_00006snu	Download File View File

Crystal structure of the W60C mutant of the (S)-selective transaminase from Chromobacterium violaceum

Ruggieri, F., Gustafsson, C., Kimbung, R.Y., Walse, B., Logan, D.T., Berglund, P.

Not Published

Released	2019-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Chromobacterium violaceum
Macromolecule	Aspartate aminotransferase family protein (protein)
Unique Ligands	EDO, PLP

Explore in 3D

6YKD \| pdb_00006ykd	Download File View File

Human Pim-1 kinase in complex with an inhibitor identified by virtual screening

Schneider, P., Welin, M., Svensson, B., Walse, B., Schneider, G.

(2020) Mol Inform 39: e2000109-e2000109

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase pim-1 (protein)
Unique Ligands	ACT, GOL, OWB

1 to 25 of 30 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1HXY | pdb_00001hxy

1LO5 | pdb_00001lo5

2PRH | pdb_00002prh

2PRL | pdb_00002prl

2PRM | pdb_00002prm

2WV8 | pdb_00002wv8

2Y64 | pdb_00002y64

2Y6G | pdb_00002y6g

2Y6H | pdb_00002y6h

2Y6J | pdb_00002y6j

2Y6K | pdb_00002y6k

2Y6L | pdb_00002y6l

4A6R | pdb_00004a6r

4A6T | pdb_00004a6t

4A6U | pdb_00004a6u

4A72 | pdb_00004a72

5A6N | pdb_00005a6n

5A6O | pdb_00005a6o

5A7C | pdb_00005a7c

5MPR | pdb_00005mpr

6ET4 | pdb_00006et4

6GK0 | pdb_00006gk0

6S4G | pdb_00006s4g

6SNU | pdb_00006snu

6YKD | pdb_00006ykd