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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Vetting, M.W."

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Search Summary

This query matches 299 Structures.

Refinements

Structure Determination Methodology

experimental (299)

Scientific Name of Source Organism

	Acinetobacter baylyi ADP1 (20)
	Mycobacterium tuberculosis H37Rv (16)
	Agrobacterium fabrum str. C58 (13)
	Burkholderia multivorans ATCC 17616 (9)
	Chromohalobacter israelensis DSM 3043 (8)
	Bordetella bronchiseptica RB50 (7)
	Polaromonas sp. JS666 (7)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (7)
	Allorhizobium ampelinum S4 (6)
	Escherichia coli (6)

More...

Taxonomy

	Bacteria (291)
	Eukaryota (7)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (299)

Polymer Entity Type

	Protein (299)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (45)
	1.5 - 2.0 (160)
	2.0 - 2.5 (72)
	2.5 - 3.0 (21)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (32)
	2005 - 2009 (46)
	2010 - 2014 (181)
	2015 - 2019 (39)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (60)
	Oxidoreductases (36)
	Isomerases (26)
	Hydrolases (18)
	Lyases (11)
	Ligases (2)

Symmetry Type

	Asymmetric (133)
	Cyclic (114)
	Dihedral (56)
	Tetrahedral (16)

SCOP Classification

	Alpha and beta proteins (a/b) (144)
	Alpha and beta proteins (a+b) (62)
	Artifacts (71)
	All beta proteins (33)
	All alpha proteins (19)

AllSelected

1 to 25 of 299 Structures

Page 1 of 12

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1DLM \| pdb_00001dlm	Download File View File

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA

Vetting, M.W., Ohlendorf, D.H.

(2000) Structure 8: 429-440

Released	2000-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	CATECHOL 1,2-DIOXYGENASE (protein)
Unique Ligands	FE, LIO

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1DLQ \| pdb_00001dlq	Download File View File

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 INHIBITED BY BOUND MERCURY

Vetting, M.W., Ohlendorf, D.H.

(2000) Structure 8: 429-440

Released	2000-05-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	CATECHOL 1,2-DIOXYGENASE (protein)
Unique Ligands	FE, HG, LIO

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1DLT \| pdb_00001dlt	Download File View File

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 WITH BOUND CATECHOL

Vetting, M.W., Ohlendorf, D.H.

(2000) Structure 8: 429-440

Released	2000-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	CATECHOL 1,2-DIOXYGENASE (protein)
Unique Ligands	CAQ, FE, LIO

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1DMH \| pdb_00001dmh	Download File View File

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 WITH BOUND 4-METHYLCATECHOL

Vetting, M.W., Ohlendorf, D.H.

(2000) Structure 8: 429-440

Released	2000-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	CATECHOL 1,2-DIOXYGENASE (protein)
Unique Ligands	FE, LIO, MCT

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1EO2 \| pdb_00001eo2	Download File View File

CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4-DIOXYGENASE

Vetting, M.W., D'Argenio, D.A., Ornston, L.N., Ohlendorf, D.H.

(2000) Biochemistry 39: 7943-7955

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN (protein) PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN (protein)
Unique Ligands	FE

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1EO9 \| pdb_00001eo9	Download File View File

CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4-DIOXYGENASE AT PH < 7.0

Vetting, M.W., D'Argenio, D.A., Ornston, L.N., Ohlendorf, D.H.

(2000) Biochemistry 39: 7943-7955

Released	2000-08-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN (protein) PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN; (protein)
Unique Ligands	FE, SO4

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1EOA \| pdb_00001eoa	Download File View File

CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4-DIOXYGENASE IN COMPLEX WITH CYANIDE

Vetting, M.W., D'Argenio, D.A., Ornston, L.N., Ohlendorf, D.H.

(2000) Biochemistry 39: 7943-7955

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN (protein) PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN (protein)
Unique Ligands	CYN, FE

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1EOB \| pdb_00001eob	Download File View File

CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4-DIOXYGENASE IN COMPLEX WITH 3,4-DIHYDROXYBENZOATE

Vetting, M.W., D'Argenio, D.A., Ornston, L.N., Ohlendorf, D.H.

(2000) Biochemistry 39: 7943-7955

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN (protein) PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN (protein)
Unique Ligands	DHB, FE

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1EOC \| pdb_00001eoc	Download File View File

CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4-DIOXYGENASE IN COMPLEX WITH 4-NITROCATECHOL

Vetting, M.W., D'Argenio, D.A., Ornston, L.N., Ohlendorf, D.H.

(2000) Biochemistry 39: 7943-7955

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN (protein) PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN (protein)
Unique Ligands	4NC, FE

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1F1R \| pdb_00001f1r	Download File View File

CRYSTAL STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS (NATIVE, NON-CRYO)

Vetting, M.W., Lipscomb, J.D., Wackett, L.P., Que Jr., L., Ohlendorf, D.H.

(2004) J Bacteriol 186: 1945-1958

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arthrobacter globiformis
Macromolecule	HOMOPROTOCATECHUATE 2,3-DIOXYGENASE (protein)
Unique Ligands	MN

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1F1U \| pdb_00001f1u	Download File View File

CRYSTAL STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS (NATIVE, LOW TEMPERATURE)

Vetting, M.W., Lipscomb, J.D., Wackett, L.P., Que Jr., L., Ohlendorf, D.H.

(2004) J Bacteriol 186: 1945-1958

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Arthrobacter globiformis
Macromolecule	HOMOPROTOCATECHUATE 2,3-DIOXYGENASE (protein)
Unique Ligands	MN

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1F1V \| pdb_00001f1v	Download File View File

ANAEROBIC SUBSTRATE COMPLEX OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS. (COMPLEX WITH 3,4-DIHYDROXYPHENYLACETATE)

Vetting, M.W., Lipscomb, J.D., Wackett, L.P., Que Jr., L., Ohlendorf, D.H.

(2004) J Bacteriol 186: 1945-1958

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Arthrobacter globiformis
Macromolecule	HOMOPROTOCATECHUATE 2,3-DIOXYGENASE (protein)
Unique Ligands	DHY, MN

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1F1X \| pdb_00001f1x	Download File View File

CRYSTAL STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM BREVIBACTERIUM FUSCUM

Vetting, M.W., Lipscomb, J.D., Wackett, L.P., Que Jr., L., Ohlendorf, D.H.

(2004) J Bacteriol 186: 1945-1958

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Brevibacterium fuscum
Macromolecule	HOMOPROTOCATECHUATE 2,3-DIOXYGENASE (protein)
Unique Ligands	FEL

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1LN1 \| pdb_00001ln1	Download File View File

Crystal Structure of Human Phosphatidylcholine Transfer Protein in Complex with Dilinoleoylphosphatidylcholine

Roderick, S.L., Chan, W.W., Agate, D.S., Olsen, L.R., Vetting, M.W., Rajashankar, K.R., Cohen, D.E.

(2002) Nat Struct Biol 9: 507-511

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylcholine transfer protein (protein)
Unique Ligands	DLP

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1LN2 \| pdb_00001ln2	Download File View File

Crystal Structure of Human Phosphatidylcholine Transfer Protein in Complex with Dilinoleoylphosphatidylcholine (Seleno-Met Protein)

Roderick, S.L., Chan, W.W., Agate, D.S., Olsen, L.R., Vetting, M.W., Rajashankar, K.R., Cohen, D.E.

(2002) Nat Struct Biol 9: 507-511

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylcholine transfer protein (protein)
Unique Ligands	DLP

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1LN3 \| pdb_00001ln3	Download File View File

Structure of Human Phosphatidylcholine Transfer Protein in Complex with Palmitoyl-Linoleoyl Phosphatidylcholine (Seleno-Met Protein)

Roderick, S.L., Chan, W.W., Agate, D.S., Olsen, L.R., Vetting, M.W., Rajashankar, K.R., Cohen, D.E.

(2002) Nat Struct Biol 9: 507-511

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylcholine transfer protein (protein)
Unique Ligands	CPL

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1M44 \| pdb_00001m44	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-APO Structure

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	SO4

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1M4D \| pdb_00001m4d	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Tobramycin

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, PAP, TOY

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1M4G \| pdb_00001m4g	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Ribostamycin

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, PAP, RIO

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1M4I \| pdb_00001m4i	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Kanamycin A

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, KAN, PAP

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1OZP \| pdb_00001ozp	Download File View File

Crystal Structure of Rv0819 from Mycobacterium tuberculosis MshD-Mycothiol Synthase Acetyl-Coenzyme A Complex.

Vetting, M.W., Roderick, S.L., Yu, M., Blanchard, J.S.

(2003) Protein Sci 12: 1954-1959

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	hypothetical protein Rv0819 (protein)
Unique Ligands	ACO

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1P0H \| pdb_00001p0h	Download File View File

Crystal Structure of Rv0819 from Mycobacterium Tuberculosis MshD-Mycothiol Synthase Coenzyme A Complex

Vetting, M.W., Roderick, S.L., Yu, M., Blanchard, J.S.

(2003) Protein Sci 12: 1954-1959

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	hypothetical protein Rv0819 (protein)
Unique Ligands	ACO, COA

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1Q0C \| pdb_00001q0c	Download File View File

Anerobic Substrate Complex of Homoprotocatechuate 2,3-Dioxygenase from Brevibacterium fuscum. (Complex with 3,4-Dihydroxyphenylacetate)

Vetting, M.W., Wackett, L.P., Que, L., Lipscomb, J.D., Ohlendorf, D.H.

(2004) J Bacteriol 186: 1945-1958

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brevibacterium fuscum
Macromolecule	homoprotocatechuate 2,3-dioxygenase (protein)
Unique Ligands	DHY, FE

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1Q0O \| pdb_00001q0o	Download File View File

CRYSTAL STRUCTURE OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM BREVIBACTERIUM FUSCUM (FULL LENGTH PROTEIN)

Vetting, M.W., Wackett, L.P., Que, L., Lipscomb, J.D., Ohlendorf, D.H.

(2004) J Bacteriol 186: 1945-1958

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Brevibacterium fuscum
Macromolecule	homoprotocatechuate 2,3-dioxygenase (protein)
Unique Ligands	FE