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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Venkitaraman, A.R."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Oryctolagus cuniculus (4)
	Dictyostelium discoideum (3)
	Escherichia coli (3)
	Homo sapiens (3)
	Gallus gallus (2)
	Salasvirus phi29 (2)
	Bacillus subtilis (1)
	Escherichia coli O157:H7 (1)
	Kluyveromyces lactis NRRL Y-1140 (1)
	Mus musculus (1)

More...

Taxonomy

	Eukaryota (13)
	Bacteria (5)
	Duplodnaviria (2)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

	Protein (17)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (9)
	2.5 - 3.0 (3)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (3)
	2010 - 2014 (9)
	2015 - 2019 (1)

Enzyme Classification Name

	Hydrolases (6)
	Lyases (1)
	Isomerases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (9)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (2)
	Artifacts (5)
	All alpha proteins (1)
	All beta proteins (1)
	Coiled coil proteins (1)

AllSelected

1 to 17 of 17 Structures

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1QZ5 \| pdb_00001qz5	Download File View File

Structure of rabbit actin in complex with kabiramide C

Klenchin, V.A., Allingham, J.S., King, R., Tanaka, J., Marriott, G., Rayment, I.

(2003) Nat Struct Biol 10: 1058-1063

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, CA, KAB

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1QZ6 \| pdb_00001qz6	Download File View File

Structure of rabbit actin in complex with jaspisamide A

Klenchin, V.A., Allingham, J.S., King, R., Tanaka, J., Marriott, G., Rayment, I.

(2003) Nat Struct Biol 10: 1058-1063

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, CA, JAS
Unique branched monosaccharides	FRU, GLC

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1R6W \| pdb_00001r6w	Download File View File

Crystal structure of the K133R mutant of o-Succinylbenzoate synthase (OSBS) from Escherichia coli. Complex with SHCHC

Klenchin, V.A., Taylor Ringia, E.A., Gerlt, J.A., Rayment, I.

(2003) Biochemistry 42: 14427-14433

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Escherichia coli
Macromolecule	o-Succinylbenzoate Synthase (protein)
Unique Ligands	164, MG

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1TKK \| pdb_00001tkk	Download File View File

The Structure of a Substrate-Liganded Complex of the L-Ala-D/L-Glu Epimerase from Bacillus subtilis

Klenchin, V.A., Schmidt, D.M., Gerlt, J.A., Rayment, I.

(2004) Biochemistry 43: 10370-10378

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus subtilis
Macromolecule	similar to chloromuconate cycloisomerase (protein)
Unique Ligands	ALA, GLU, MG

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1YXQ \| pdb_00001yxq	Download File View File

Crystal structure of actin in complex with swinholide A

Klenchin, V.A., King, R., Tanaka, J., Marriott, G., Rayment, I.

(2005) Chem Biol 12: 287-291

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Oryctolagus cuniculus
Macromolecule	actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, EDO, MG, SWI

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2HMP \| pdb_00002hmp	Download File View File

Uncomplexed actin cleaved with protease ECP32

Klenchin, V.A., Khaitlina, S.Y., Rayment, I.

(2006) J Mol Biology 362: 140-150

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.899 Å
Organisms	Oryctolagus cuniculus
Macromolecule	actin, alpha skeletal muscle (protein)
Unique Ligands	211, ATP, EDO, SPD, SR

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3ECP \| pdb_00003ecp	Download File View File

Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA

Klenchin, V.A.

(2008) Nucleic Acids Res 36: 5855-5862

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Tn5 transposase (protein) DNA non-transferred strand (nucleic acid) DNA transferred strand (nucleic acid)
Unique Ligands	GOL

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3MTU \| pdb_00003mtu	Download File View File

Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle

Klenchin, V.A., Frye, J., Rayment, I.

(2010) Biochemistry 49: 4908-4920

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus Homo sapiens Salasvirus phi29
Macromolecule	Capsid assembly scaffolding protein,Tropomyosin alpha-1 chain (protein) Tropomyosin alpha-1 chain,Microtubule-associated protein RP/EB family member 1 (protein)
Unique Ligands	CL, EDO, EOH

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3MUD \| pdb_00003mud	Download File View File

Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle

Klenchin, V.A., Frye, J., Rayment, I.

(2010) Biochemistry 49: 4908-4920

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	DNA repair protein XRCC4,Tropomyosin alpha-1 chain (protein) Tropomyosin alpha-1 chain,Microtubule-associated protein RP/EB family member 1 (protein)
Unique Ligands	EDO, SO4

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3MYH \| pdb_00003myh	Download File View File

Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236

Frye, J.J., Klenchin, V.A., Bagshaw, C.R., Rayment, I.

(2010) Biochemistry 49: 4897-4907

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Dictyostelium discoideum
Macromolecule	Myosin-2 heavy chain (protein)
Unique Ligands	ADP, BIT, MG, VO4

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3MYK \| pdb_00003myk	Download File View File

Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236

Frye, J.J., Klenchin, V.A., Bagshaw, C.R., Rayment, I.

(2010) Biochemistry 49: 4897-4907

Released	2010-05-26
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Dictyostelium discoideum
Macromolecule	Myosin-2 heavy chain (protein)
Unique Ligands	ANP, BIT, MG

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3MYL \| pdb_00003myl	Download File View File

Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236

Frye, J.J., Klenchin, V.A., Bagshaw, C.R., Rayment, I.

(2010) Biochemistry 49: 4897-4907

Released	2010-05-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dictyostelium discoideum
Macromolecule	Myosin-2 heavy chain (protein)
Unique Ligands	MG, POP

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3OA7 \| pdb_00003oa7	Download File View File

Structure of the C-terminal domain of Cnm67, a core component of the spindle pole body of Saccharomyces cerevisiae

Klenchin, V.A., Frye, J.J., Rayment, I.

(2011) J Biological Chem 286: 18240-18250

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae Salasvirus phi29
Macromolecule	Head morphogenesis protein, Chaotic nuclear migration protein 67 fusion protein (protein)

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4DB1 \| pdb_00004db1	Download File View File

Cardiac human myosin S1dC, beta isoform complexed with Mn-AMPPNP

Klenchin, V.A., Deacon, J.C., Combs, A.C., Leinwand, L.A., Rayment, I.

To be published

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Myosin-7 (protein)
Unique Ligands	ANP, MN

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4DM0 \| pdb_00004dm0	Download File View File

TN5 transposase: 20MER OUTSIDE END 2 MN complex

Klenchin, V.A., Lovell, S., Goryshin, I.Y., Reznikoff, W.R., Rayment, I.

(2002) Nat Struct Biol 9: 278-281

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Transposase for transposon Tn5 (protein) DNA NON-TRANSFERRED STRAND (nucleic acid) DNA TRANSFERRED STRAND (nucleic acid)
Unique Ligands	EDO, MN

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4DS7 \| pdb_00004ds7	Download File View File

Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110

Klenchin, V.A., Rayment, I.

(2017) Mol Biol Cell 28: 3298-3314

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Kluyveromyces lactis NRRL Y-1140 Saccharomyces cerevisiae S288C
Macromolecule	Calmodulin (protein) Spindle pole body component 110 (protein)
Unique Ligands	GOL, SO4, SR

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5JON \| pdb_00005jon	Download File View File

Crystal structure of the unliganded form of HCN2 CNBD

Klenchin, V.A., Chanda, B.

(2016) Elife 5:

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.042 Å
Organisms	Escherichia coli O157:H7 Mus musculus
Macromolecule	Maltose-binding periplasmic protein,Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (protein)
Unique Ligands	NO3
Unique branched monosaccharides	GLC

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1QZ5 | pdb_00001qz5

Structure of rabbit actin in complex with kabiramide C

1QZ6 | pdb_00001qz6

Structure of rabbit actin in complex with jaspisamide A

1R6W | pdb_00001r6w

Crystal structure of the K133R mutant of o-Succinylbenzoate synthase (OSBS) from Escherichia coli. Complex with SHCHC

1TKK | pdb_00001tkk

The Structure of a Substrate-Liganded Complex of the L-Ala-D/L-Glu Epimerase from Bacillus subtilis

1YXQ | pdb_00001yxq

Crystal structure of actin in complex with swinholide A

2HMP | pdb_00002hmp

Uncomplexed actin cleaved with protease ECP32

3ECP | pdb_00003ecp

Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA

3MTU | pdb_00003mtu

Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle

3MUD | pdb_00003mud

Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle

3MYH | pdb_00003myh

Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236

3MYK | pdb_00003myk

Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236

3MYL | pdb_00003myl

Insights into the Importance of Hydrogen Bonding in the Gamma-Phosphate Binding Pocket of Myosin: Structural and Functional Studies of Ser236

3OA7 | pdb_00003oa7

Structure of the C-terminal domain of Cnm67, a core component of the spindle pole body of Saccharomyces cerevisiae

4DB1 | pdb_00004db1

Cardiac human myosin S1dC, beta isoform complexed with Mn-AMPPNP

4DM0 | pdb_00004dm0

TN5 transposase: 20MER OUTSIDE END 2 MN complex

4DS7 | pdb_00004ds7

Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110

5JON | pdb_00005jon

Crystal structure of the unliganded form of HCN2 CNBD

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1QZ5 | pdb_00001qz5

1QZ6 | pdb_00001qz6

1R6W | pdb_00001r6w

1TKK | pdb_00001tkk

1YXQ | pdb_00001yxq

2HMP | pdb_00002hmp

3ECP | pdb_00003ecp

3MTU | pdb_00003mtu

3MUD | pdb_00003mud

3MYH | pdb_00003myh

3MYK | pdb_00003myk

3MYL | pdb_00003myl

3OA7 | pdb_00003oa7

4DB1 | pdb_00004db1

4DM0 | pdb_00004dm0

4DS7 | pdb_00004ds7

5JON | pdb_00005jon