RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Tateno, M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Arabidopsis thaliana (3)
	Citrobacter sp. S-77 (3)
	Citrobacter sp. MGH106 (1)
	Rattus norvegicus (1)
	Thermus thermophilus HB8 (1)

Taxonomy

	Bacteria (4)
	Eukaryota (4)

Experimental Method

	SOLUTION NMR (4)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (8)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (5)
	2015 - 2019 (3)

Enzyme Classification Name

	Oxidoreductases (3)
	Transferases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (5)
	Cyclic (3)

SCOP Classification

	Multi-domain proteins (alpha and beta) (3)
	Alpha and beta proteins (a+b) (4)
	All alpha proteins (1)
	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 8 of 8 Structures

Page 1 of 1

Sort by

Explore in 3D

1GCC \| pdb_00001gcc	Download File View File

SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE

Yamasaki, K., Allen, M.D., Ohme-Takagi, M., Tateno, M., Suzuki, M.

(1998) EMBO J 17: 5484-5496

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 (protein) DNA (5'-D(GPCPTPGPGPCPGPGPCPTPA)-3') (nucleic acid) DNA (5'-D(TPAPGPCPCPGPCPCPAPGPC)-3') (nucleic acid)

Explore in 3D

1ILE \| pdb_00001ile	Download File View File

ISOLEUCYL-TRNA SYNTHETASE

Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Schimmel, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1998) Science 280: 578-582

Released	1999-04-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ISOLEUCYL-TRNA SYNTHETASE (protein)
Unique Ligands	ZN

Explore in 3D

1RRB \| pdb_00001rrb	Download File View File

THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE

Terada, T., Ito, Y., Shirouzu, M., Tateno, M., Hashimoto, K., Kigawa, T., Ebisuzaki, T., Takio, K., Shibata, T., Yokoyama, S., Smith, B.O., Laue, E.D., Cooper, J.A., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Mol Biology 286: 219-232

Released	1999-03-30
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE (protein)

Explore in 3D

2GCC \| pdb_00002gcc	Download File View File

SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE

Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M., Suzuki, M.

(1998) EMBO J 17: 5484-5496

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ATERF1 (protein)

Explore in 3D

3GCC \| pdb_00003gcc	Download File View File

SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, 46 STRUCTURES

Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M., Suzuki, M.

(1998) EMBO J 17: 5484-5496

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ATERF1 (protein)

Explore in 3D

5XVB \| pdb_00005xvb	Download File View File

[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an H2-reduced condition

Nishikawa, K., Matsuura, H., Muhd Noor, N.D., Tai, H., Hirota, S., Kim, J., Kang, J., Tateno, M., Yoon, K.S., Ogo, S., Shomura, Y., Higuchi, Y.

(2018) Chem Commun (Camb) 54: 12385-12388

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Citrobacter sp. S-77
Macromolecule	[NiFe]-hydrogenase 2 large subunit (protein) [NiFe]-hydrogenase 2 small subunit (protein)
Unique Ligands	F3S, GOL, MG, NFU, SF4

Explore in 3D

5XVC \| pdb_00005xvc	Download File View File

[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized condition

Nishikawa, K., Matsuura, H., Muhd Noor, N.D., Tai, H., Hirota, S., Kim, J., Kang, J., Tateno, M., Yoon, K.S., Ogo, S., Shomura, Y., Higuchi, Y.

(2018) Chem Commun (Camb) 54: 12385-12388

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Citrobacter sp. S-77
Macromolecule	[NiFe]-hydrogenase 2 large subunit (protein) [NiFe]-hydrogenase 2 small subunit (protein)
Unique Ligands	8JU, F3S, MG, NFV, PEG, SF4

Explore in 3D

5XVD \| pdb_00005xvd	Download File View File

[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition

Nishikawa, K., Matsuura, H., Muhd Noor, N.D., Tai, H., Hirota, S., Kim, J., Kang, J., Tateno, M., Yoon, K.S., Ogo, S., Shomura, Y., Higuchi, Y.

(2018) Chem Commun (Camb) 54: 12385-12388

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Citrobacter sp. MGH106 Citrobacter sp. S-77
Macromolecule	Hydrogenase-2 small chain (protein) [NiFe]-hydrogenase 2 large subunit (protein)
Unique Ligands	8JU, F3S, GOL, MG, NA, NFV, SF4

1 to 8 of 8 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1GCC | pdb_00001gcc

SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE

1ILE | pdb_00001ile

ISOLEUCYL-TRNA SYNTHETASE

1RRB | pdb_00001rrb

THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE

2GCC | pdb_00002gcc

SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE

3GCC | pdb_00003gcc

SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, 46 STRUCTURES

5XVB | pdb_00005xvb

[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an H2-reduced condition

5XVC | pdb_00005xvc

[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized condition

5XVD | pdb_00005xvd

[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GCC | pdb_00001gcc

1ILE | pdb_00001ile

1RRB | pdb_00001rrb

2GCC | pdb_00002gcc

3GCC | pdb_00003gcc

5XVB | pdb_00005xvb

5XVC | pdb_00005xvc

5XVD | pdb_00005xvd