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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Stocker, A."

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Search Summary

This query matches 66 Structures.

Refinements

Structure Determination Methodology

experimental (66)

Scientific Name of Source Organism

	synthetic construct (39)
	Pseudomonas aeruginosa (32)
	Homo sapiens (13)
	Pseudomonas aeruginosa PAO1 (12)
	Bacillus pumilus (3)
	Bacillus sp. TA2.A1 (1)
	Ralstonia solanacearum (1)
	unidentified (1)

Taxonomy

	Bacteria (49)
	other sequences (39)
	Eukaryota (13)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (66)

Polymer Entity Type

	Protein (66)
	DNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (15)
	1.5 - 2.0 (27)
	2.0 - 2.5 (15)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (3)
	2010 - 2014 (11)
	2015 - 2019 (34)
	2020 - 2024 (14)

Enzyme Classification Name

Translocases (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (11)
	Dihedral (10)
	Octahedral (3)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (7)

AllSelected

1 to 25 of 66 Structures

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1O6U \| pdb_00001o6u	Download File View File

The Crystal Structure of Human Supernatant Protein Factor

Stocker, A., Schulze-Briese, C., Tomizaki, T.

(2002) Structure 10: 1533

Released	2003-10-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	SEC14-LIKE PROTEIN 2 (protein)
Unique Ligands	PLM

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1OIP \| pdb_00001oip	Download File View File

The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

Meier, R., Tomizaki, T., Schulze-Briese, C., Baumann, U., Stocker, A.

(2003) J Mol Biology 331: 725

Released	2004-01-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-TOCOPHEROL TRANSFER PROTEIN (protein)
Unique Ligands	SO4, VIV

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1OIZ \| pdb_00001oiz	Download File View File

The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein

Meier, R., Tomizaki, T., Schulze-Briese, C., Baumann, U., Stocker, A.

(2003) J Mol Biology 331: 725

Released	2004-01-14
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-TOCOPHEROL TRANSFER PROTEIN (protein)
Unique Ligands	TRT

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1OLM \| pdb_00001olm	Download File View File

Supernatant Protein Factor in Complex with RRR-alpha-Tocopherylquinone: A Link between Oxidized Vitamin E and Cholesterol Biosynthesis

Stocker, A., Baumann, U.

(2003) J Mol Biology 332: 759

Released	2004-08-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	SEC14-LIKE PROTEIN 2 (protein)
Unique Ligands	VTQ

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2QE7 \| pdb_00002qe7	Download File View File

Crystal structure of the f1-atpase from the thermoalkaliphilic bacterium bacillus sp. ta2.a1

Stocker, A., Keis, S., Vonck, J., Cook, G.M., Dimroth, P.

(2007) Structure 15: 904-914

Released	2007-08-21
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	Bacillus sp. TA2.A1
Macromolecule	ATP synthase subunit alpha (protein) ATP synthase subunit beta (protein) ATP synthase subunit epsilon (protein) ATP synthase subunit gamma (protein)

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3HX3 \| pdb_00003hx3	Download File View File

Crystal structure of CRALBP mutant R234W

Stocker, A., He, X., Lobsiger, J.

(2009) Proc Natl Acad Sci U S A 106: 18545-18550

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Retinaldehyde-binding protein 1 (protein)
Unique Ligands	RET

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3HY5 \| pdb_00003hy5	Download File View File

Crystal structure of CRALBP

Stocker, A., He, X., Lobsiger, J.

(2009) Proc Natl Acad Sci U S A 106: 18545-18550

Released	2009-10-20
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Homo sapiens
Macromolecule	Retinaldehyde-binding protein 1 (protein)
Unique Ligands	RET, TLA

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3ZYB \| pdb_00003zyb	Download File View File

CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH GALAG0 AT 2.3 A RESOLUTION

Kadam, R.U., Bergmann, M., Hurley, M., Garg, D., Cacciarini, M., Swiderska, M.A., Nativi, C., Sattler, M., Smyth, A.R., Williams, P., Camara, M., Stocker, A., Darbre, T., Reymond, J.-L.

(2011) Angew Chem Int Ed Engl 50: 10631

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Pseudomonas aeruginosa PAO1 synthetic construct
Macromolecule	GALA-LYS-PRO-LEUNH2 (protein) PA-I galactophilic lectin (protein)
Unique Ligands	CA, GAL, PHB

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3ZYF \| pdb_00003zyf	Download File View File

CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH NPG AT 1.9 A RESOLUTION

Kadam, R.U., Bergmann, M., Hurley, M., Garg, D., Cacciarini, M., Swiderska, M.A., Nativi, C., Sattler, M., Smyth, A.R., Williams, P., Camara, M., Stocker, A., Darbre, T., Reymond, J.-L.

(2011) Angew Chem Int Ed Engl 50: 10631

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.944 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I GALACTOPHILIC LECTIN (protein)
Unique Ligands	147, CA

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3ZYH \| pdb_00003zyh	Download File View File

CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH GALBG0 AT 1.5 A RESOLUTION

Kadam, R.U., Bergmann, M., Hurley, M., Garg, D., Cacciarini, M., Swiderska, M.A., Nativi, C., Sattler, M., Smyth, A.R., Williams, P., Camara, M., Stocker, A., Darbre, T., Reymond, J.-L.

(2011) Angew Chem Int Ed Engl 50: 10631

Released	2011-09-21
Method	X-RAY DIFFRACTION 1.501 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	CA, G0S

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4CIZ \| pdb_00004ciz	Download File View File

Crystal structure of the complex of the Cellular Retinal Binding Protein with 9-cis-retinal

Bolze, C.S., Helbling, R.E., Owen, R.L., Pearson, A.R., Pompidor, G., Dworkowski, F., Fuchs, M.R., Furrer, J., Golczak, M., Palczewski, K., Cascella, M., Stocker, A.

(2014) J Am Chem Soc 136: 137

Released	2014-01-08
Method	X-RAY DIFFRACTION 3.403 Å
Organisms	Homo sapiens
Macromolecule	RETINALDEHYDE-BINDING PROTEIN 1 (protein)
Unique Ligands	RET, TLA

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4CJ6 \| pdb_00004cj6	Download File View File

Crystal structure of the complex of the Cellular Retinal Binding Protein Mutant R234W with 9-cis-retinal

Bolze, C.S., Helbling, R.E., Owen, R.L., Pearson, A.R., Pompidor, G., Dworkowski, F., Fuchs, M.R., Furrer, J., Golczak, M., Palczewski, K., Cascella, M., Stocker, A.

(2014) J Am Chem Soc 136: 137

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.896 Å
Organisms	Homo sapiens
Macromolecule	RETINALDEHYDE-BINDING PROTEIN 1 (protein)
Unique Ligands	RET

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4LJH \| pdb_00004ljh	Download File View File

Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with 1-Methyl-3-indolyl-b-D-galactopyranoside at 1.45 A Resolution

Kadam, R.U., Stocker, A., Reymond, J.L.

(2013) ACS Chem Biol 8: 1925-1930

Released	2013-10-30
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	CA, GAL, MHD

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4LK6 \| pdb_00004lk6	Download File View File

Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with Chlorophenol Red-b-D-galactopyranoside at 2.86 A Resolution

Kadam, R.U., Stocker, A., Reymond, J.L.

(2013) ACS Chem Biol 8: 1925-1930

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.859 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	CA, GAL, LRD

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4LK7 \| pdb_00004lk7	Download File View File

Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with Resorufin-b-D-galactopyranoside at 1.76 A Resolution

Kadam, R.U., Stocker, A., Reymond, J.L.

(2013) ACS Chem Biol 8: 1925-1930

Released	2013-10-30
Method	X-RAY DIFFRACTION 1.758 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	04G, CA, GAL

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4LKD \| pdb_00004lkd	Download File View File

Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with GalA-QRS at 2.31 A Resolution

Kadam, R.U., Stocker, A., Reymond, J.-L.

(2013) Chemistry 19: 17054-17063

Released	2013-12-18
Method	X-RAY DIFFRACTION 2.307 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I galactophilic lectin (protein) peptide QRSA (protein)
Unique Ligands	CA, GAL, PHB

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4LKE \| pdb_00004lke	Download File View File

Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with GalA-WRI at 1.65 A Resolution

Kadam, R.U., Stocker, A., Reymond, J.-L.

(2013) Chemistry 19: 17054-17063

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	PA-I galactophilic lectin (protein) peptide WRIA (protein)
Unique Ligands	CA, GAL, PHB

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4LKF \| pdb_00004lkf	Download File View File

Crystal Structure of Pseudomonas aeruginosa Lectin LecA Complexed with GalA-WKY at 1.64 A Resolution

Kadam, R.U., Stocker, A., Reymond, J.-L.

(2013) Chemistry 19: 17054-17063

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PA-I galactophilic lectin (protein) peptide WKYL (protein)
Unique Ligands	CA, GAL, PHB

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4OMJ \| pdb_00004omj	Download File View File

Crystal structure of SPF bound to 2,3-oxidosqualene

Christen, M., Marcaida, M.J., Lamprakis, C., Cascella, M., Stocker, A.

(2015) J Struct Biol 190: 261-270

Released	2015-04-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	SEC14-like protein 2 (protein)
Unique Ligands	2TX, CL, SO4

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4OMK \| pdb_00004omk	Download File View File

Crystal structure of SPF bound to squalene

Christen, M., Marcaida, M.J., Lamprakis, C., Cascella, M., Stocker, A.

(2015) J Struct Biol 190: 261-270

Released	2015-04-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	SEC14-like protein 2 (protein)
Unique Ligands	CL, IPA, SO4, SQL

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4YW6 \| pdb_00004yw6	Download File View File

Structural Insight into Divalent Galactoside Binding to Pseudomonas aeruginosa lectin LecA

Visini, R., Jin, X., Michaud, G., Bergmann, M., Gillon, E., Imberty, A., Stocker, A., Darbre, T., Pieters, R., Reymond, J.-L.

(2015) ACS Chem Biol 10: 2455-2462

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	CA, G0P

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4YW7 \| pdb_00004yw7	Download File View File

Structural Insight into Divalent Galactoside Binding to Pseudomonas aeruginosa lectin LecA

Visini, R., Jin, X., Michaud, G., Bergmann, M., Gillon, E., Imberty, A., Stocker, A., Darbre, T., Pieters, R., Reymond, J.-L.

(2015) ACS Chem Biol 10: 2455-2462

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	4J0, CA, GAL

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4YWA \| pdb_00004ywa	Download File View File

Structural Insight into Divalent Galactoside Binding to Pseudomonas aeruginosa lectin LecA

Visini, R., Jin, X., Michaud, G., Bergmann, M., Gillon, E., Imberty, A., Stocker, A., Darbre, T., Pieters, R., Reymond, J.-L.

(2015) ACS Chem Biol 10: 2455-2462

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.192 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PA-I galactophilic lectin (protein)
Unique Ligands	4J9, CA

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5D21 \| pdb_00005d21	Download File View File

Multivalency Effects in Glycopeptide Dendrimer Inhibitors of Pseudomonas aeruginosa Biofilms Targeting Lectin LecA

Bergmann, M., Michaud, G., Visini, R., Jin, X., Stocker, A., Darbre, T., Reymond, J.-L.

(2016) Org Biomol Chem 14: 138-148

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	LecA (protein)
Unique Ligands	56N, CA

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5D2A \| pdb_00005d2a	Download File View File

Bifunctional dendrimers

Michaud, G., Visini, R., Stocker, A., Darbre, T., Reymond, J.L.

(2016) Chem Sci 7: 166-182

Released	2016-02-10
Method	X-RAY DIFFRACTION 2.134 Å
Organisms	Pseudomonas aeruginosa synthetic construct
Macromolecule	Fucose-binding lectin (protein) ZDC-ALA-PRO-ALA-LYS-PHE-CYS-ALA-PRO-ALA-PHB-GAL (protein)
Unique Ligands	CA, GAL, PHB, ZDC

1 to 25 of 66 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1O6U | pdb_00001o6u

1OIP | pdb_00001oip

1OIZ | pdb_00001oiz

1OLM | pdb_00001olm

2QE7 | pdb_00002qe7

3HX3 | pdb_00003hx3

3HY5 | pdb_00003hy5

3ZYB | pdb_00003zyb

3ZYF | pdb_00003zyf

3ZYH | pdb_00003zyh

4CIZ | pdb_00004ciz

4CJ6 | pdb_00004cj6

4LJH | pdb_00004ljh

4LK6 | pdb_00004lk6

4LK7 | pdb_00004lk7

4LKD | pdb_00004lkd

4LKE | pdb_00004lke

4LKF | pdb_00004lkf

4OMJ | pdb_00004omj

4OMK | pdb_00004omk

4YW6 | pdb_00004yw6

4YW7 | pdb_00004yw7

4YWA | pdb_00004ywa

5D21 | pdb_00005d21

5D2A | pdb_00005d2a