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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Shiraki, T."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

Homo sapiens (14)

Taxonomy

Eukaryota (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (5)

Release Date

	2005 - 2009 (8)
	2010 - 2014 (6)

Symmetry Type

	Asymmetric (14)
	Cyclic (14)

SCOP Classification

All alpha proteins (14)

AllSelected

1 to 14 of 14 Structures

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2ZK0 \| pdb_00002zk0	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2009) J Mol Biology 385: 188-199

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)

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2ZK1 \| pdb_00002zk1	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2009) J Mol Biology 385: 188-199

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	PTG

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2ZK2 \| pdb_00002zk2	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with glutathion conjugated 15-deoxy-delta12,14-prostaglandin J2

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2009) J Mol Biology 385: 188-199

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	GSH, PTG

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2ZK3 \| pdb_00002zk3	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 8-oxo-eicosatetraenoic acid

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2009) J Mol Biology 385: 188-199

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	OCX

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2ZK4 \| pdb_00002zk4	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-oxo-eicosatetraenoic acid

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2009) J Mol Biology 385: 188-199

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	OCR

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2ZK5 \| pdb_00002zk5	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with nitro-233

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2009) J Mol Biology 385: 188-199

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	NRO

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2ZK6 \| pdb_00002zk6	Download File View File

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with C8-BODIPY

Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	C08

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2ZVT \| pdb_00002zvt	Download File View File

Cys285Ser mutant PPARgamma ligand-binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2

Waku, T., Oyama, T., Shiraki, T., Morikawa, K.

(2009) FEBS Lett 583: 320-324

Released	2009-10-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	PTG

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3ADS \| pdb_00003ads	Download File View File

Human PPARgamma ligand-binding domain in complex with indomethacin

Waku, T., Shiraki, T., Oyama, T., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	IMN

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3ADT \| pdb_00003adt	Download File View File

Human PPARgamma ligand-binding domain in complex with 5-hydroxy-indole acetate

Waku, T., Shiraki, T., Oyama, T., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	HID

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3ADU \| pdb_00003adu	Download File View File

Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate

Waku, T., Shiraki, T., Oyama, T., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	MYI

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3ADV \| pdb_00003adv	Download File View File

Human PPARgamma ligand-binding domain in complex with serotonin

Waku, T., Shiraki, T., Oyama, T., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	SRO

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3ADW \| pdb_00003adw	Download File View File

Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate and 15-oxo-eicosatetraenoic acid

Waku, T., Shiraki, T., Oyama, T., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	MYI, OCR

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3ADX \| pdb_00003adx	Download File View File

Human PPARgamma ligand-binding domain in complex with indomethacin and nitro-233

Waku, T., Shiraki, T., Oyama, T., Morikawa, K.

(2010) EMBO J 29: 3395-3407

Released	2010-12-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	IMN, NRO

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2ZK0 | pdb_00002zk0

Human peroxisome proliferator-activated receptor gamma ligand binding domain

2ZK1 | pdb_00002zk1

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2

2ZK2 | pdb_00002zk2

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with glutathion conjugated 15-deoxy-delta12,14-prostaglandin J2

2ZK3 | pdb_00002zk3

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 8-oxo-eicosatetraenoic acid

2ZK4 | pdb_00002zk4

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-oxo-eicosatetraenoic acid

2ZK5 | pdb_00002zk5

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with nitro-233

2ZK6 | pdb_00002zk6

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with C8-BODIPY

2ZVT | pdb_00002zvt

Cys285Ser mutant PPARgamma ligand-binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2

3ADS | pdb_00003ads

Human PPARgamma ligand-binding domain in complex with indomethacin

3ADT | pdb_00003adt

Human PPARgamma ligand-binding domain in complex with 5-hydroxy-indole acetate

3ADU | pdb_00003adu

Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate

3ADV | pdb_00003adv

Human PPARgamma ligand-binding domain in complex with serotonin

3ADW | pdb_00003adw

Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate and 15-oxo-eicosatetraenoic acid

3ADX | pdb_00003adx

Human PPARgamma ligand-binding domain in complex with indomethacin and nitro-233

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

2ZK0 | pdb_00002zk0

2ZK1 | pdb_00002zk1

2ZK2 | pdb_00002zk2

2ZK3 | pdb_00002zk3

2ZK4 | pdb_00002zk4

2ZK5 | pdb_00002zk5

2ZK6 | pdb_00002zk6

2ZVT | pdb_00002zvt

3ADS | pdb_00003ads

3ADT | pdb_00003adt

3ADU | pdb_00003adu

3ADV | pdb_00003adv

3ADW | pdb_00003adw

3ADX | pdb_00003adx