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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Shinkai, A."

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Search Summary

This query matches 100 Structures.

Refinements

Structure Determination Methodology

experimental (100)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (25)
	Aquifex aeolicus VF5 (18)
	Geobacillus kaustophilus HTA426 (8)
	Thermus thermophilus (8)
	Pyrococcus horikoshii OT3 (7)
	Sulfurisphaera tokodaii (7)
	Sulfurisphaera tokodaii str. 7 (7)
	Aquifex aeolicus (4)
	Pyrococcus horikoshii (4)
	Escherichia coli (3)

More...

Taxonomy

	Bacteria (71)
	Archaea (28)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (100)

Polymer Entity Type

	Protein (100)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (52)
	2.0 - 2.5 (39)
	2.5 - 3.0 (8)

Release Date

	2005 - 2009 (86)
	2010 - 2014 (14)

Enzyme Classification Name

	Lyases (14)
	Transferases (13)
	Hydrolases (7)
	Oxidoreductases (5)
	Isomerases (2)
	Translocases (2)

Symmetry Type

	Cyclic (53)
	Dihedral (35)
	Asymmetric (23)
	Tetrahedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (35)
	Alpha and beta proteins (a/b) (30)
	All alpha proteins (15)
	Multi-domain proteins (alpha and beta) (4)
	All beta proteins (2)

AllSelected

1 to 25 of 100 Structures

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2CYY	Download File View File

Crystal structure of PH1519 from Pyrococcus horikosii OT3

Okazaki, N., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Putative HTH-type transcriptional regulator PH1519 (protein)
Unique Ligands	CA, GLN

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2CZ8	Download File View File

Crystal Structure of tt0972 protein from Thermus thermophilus

Kumei, M., Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	tt0972 protein (protein)
Unique Ligands	FAD, K, PO4

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2CZ9	Download File View File

Crystal Structure of galactokinase from Pyrococcus horikoshi

Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Probable galactokinase (protein)
Unique Ligands	CL, GOL

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2D1H	Download File View File

Crystal structure of ST1889 protein from thermoacidophilic archaeon Sulfolobus tokodaii

Shinkai, A., Sekine, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) J Mol Biol 372: 1293-1304

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	109aa long hypothetical transcriptional regulator (protein)

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2DEG	Download File View File

Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions

Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus
Macromolecule	tt0972 protein (protein)
Unique Ligands	GOL, MN, NA

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2DEH	Download File View File

Crystal structure of tt0972 protein form Thermus Thermophilus with Cl(-) ions

Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Thermus thermophilus
Macromolecule	tt0972 protein (protein)
Unique Ligands	CL, NA

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2DEI	Download File View File

Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PNP and galactose

Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Probable galactokinase (protein)
Unique Ligands	GLA, MAP

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2DEJ	Download File View File

Crystal Structure of galaktokinase from Pyrococcus horikoshii with AMP-PN and galactose

Inagaki, E., Sakamoto, K., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Probable galactokinase (protein)
Unique Ligands	APW, GLA

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2DEV	Download File View File

Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions

Inagaki, E., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Thermus thermophilus
Macromolecule	tt0972 protein (protein)
Unique Ligands	CL, CS, NA

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2DJW	Download File View File

Crystal structure of TTHA0845 from Thermus thermophilus HB8

Okazaki, N., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 855-860

Released	2006-09-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	probable transcriptional regulator, AsnC family (protein)
Unique Ligands	ZN

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2DSY	Download File View File

Crystal structure of TTHA0281 from thermus thermophilus HB8

Okazaki, N., Kumei, M., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 173-177

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	Hypothetical protein TTHA0281 (protein)
Unique Ligands	MG, NHE

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2E7W	Download File View File

Crystal structure of the Lrp/AsnC like transcriptional regulators from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2E7X	Download File View File

Structure of the Lrp/AsnC like transcriptional regulator from Sulfolobus tokodaii 7 complexed with its cognate ligand

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2E85	Download File View File

Crystal Structure of the Hydrogenase 3 Maturation protease

Tanaka, T., Kumarevel, T.S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Biochem Biophys Res Commun 389: 310-314

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Hydrogenase 3 maturation protease (protein)
Unique Ligands	CA

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2EB7	Download File View File

Crystal structure of the hypothetical regulator from Sulfolobus tokodaii 7

Kumarevel, T.S., Nishio, M., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Struct Biol 161: 9-17

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	146aa long hypothetical transcriptional regulator (protein)

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2EFN	Download File View File

Crystal Structure of Ser 32 to Ala of ST1022 from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-02-26
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	MG

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2EFO	Download File View File

Crystal structure of Tyr77 to Ala of ST1022 from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-02-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	MG

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2EFP	Download File View File

Crystal Structure of Tyr77 to Ala of ST1022-Glutamine Complex from Sulolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-02-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2EFQ	Download File View File

Crystal Structure of Thr134 to Ala of ST1022-Glutamine Complex from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2EG1	Download File View File

The crystal structure of PII protein

Sakai, H., Shinkai, A., Kitamura, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	Nitrogen regulatory protein P-II (protein)
Unique Ligands	CL, SO4

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2EG2	Download File View File

The crystal structure of PII protein

Sakai, H., Shinkai, A., Kitamura, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Aquifex aeolicus
Macromolecule	Nitrogen regulatory protein P-II (protein)
Unique Ligands	ATP, CL

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2EG3	Download File View File

Crystal Structure of Probable Thiosulfate Sulfurtransferase

Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Probable thiosulfate sulfurtransferase (protein)
Unique Ligands	SO4, ZN

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2EG4	Download File View File

Crystal Structure of Probable Thiosulfate Sulfurtransferase

Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Probable thiosulfate sulfurtransferase (protein)
Unique Ligands	SO4, ZN

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2EH3	Download File View File

Crystal structure of aq_1058, a transcriptional regulator (TerR/AcrR family) from Aquifex aeolicus VF5

Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Transcriptional regulator (protein)
Unique Ligands	MG

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2EQA	Download File View File

Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii

Agari, Y., Shinkai, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Proteins 70: 1108-1111

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	Hypothetical protein ST1526 (protein)
Unique Ligands	AMP, MG

1 to 25 of 100 Structures

Page 1 of 4

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