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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sanches, M."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (5)
	Human immunodeficiency virus 1 (4)
	Mus musculus (3)
	Escherichia coli (1)
	Saccharomyces cerevisiae (1)
	Xanthomonas citri (1)

Taxonomy

	Eukaryota (9)
	Riboviria (4)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (8)
	2010 - 2014 (5)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (6)
	Ligases (2)

Symmetry Type

	Cyclic (11)
	Asymmetric (4)
	Dihedral (1)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 15 of 15 Structures

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1NNS \| pdb_00001nns	Download File View File

L-asparaginase of E. coli in C2 space group and 1.95 A resolution

Sanches, M., Barbosa, J.A.R.G., de Oliveira, R.T., Neto, J.A.A., Polikarpov, I.

(2003) Acta Crystallogr D Biol Crystallogr 59: 416-422

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	L-asparaginase II (protein)
Unique Ligands	ASP

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2O95 \| pdb_00002o95	Download File View File

Crystal Structure of the Metal-Free Dimeric Human Mov34 MPN domain (residues 1-186)

Sanches, M., Alves, B.S.C., Zanchin, N.I.T., Guimaraes, B.G.

(2007) J Mol Biology 370: 846-855

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	26S proteasome non-ATPase regulatory subunit 7 (protein)
Unique Ligands	12P, ETE, PG4, PGE, SO4

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2O96 \| pdb_00002o96	Download File View File

Crystal Structure of the Metal-Free Dimeric Human Mov34 MPN domain (residues 1-177)

Sanches, M., Alves, B.S.C., Zanchin, N.I.T., Guimaraes, B.G.

(2007) J Mol Biology 370: 846-855

Released	2007-07-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	26S proteasome non-ATPase regulatory subunit 7 (protein)

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2P3A \| pdb_00002p3a	Download File View File

Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor

Sanches, M., Krauchenco, S., Martins, N.H., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2007) J Mol Biology 369: 1029-1040

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease (protein)
Unique Ligands	3TL

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2P3B \| pdb_00002p3b	Download File View File

Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor

Sanches, M., Krauchenco, S., Martins, N.H., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2007) J Mol Biology 369: 1029-1040

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease (protein)
Unique Ligands	3TL

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2P3C \| pdb_00002p3c	Download File View File

Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor

Sanches, M., Krauchenco, S., Martins, N.H., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2007) J Mol Biology 369: 1029-1040

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease (protein)
Unique Ligands	3TL, ACY

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2P3D \| pdb_00002p3d	Download File View File

Crystal Structure of the multi-drug resistant mutant subtype F HIV protease complexed with TL-3 inhibitor

Sanches, M., Krauchenco, S., Martins, N.H., Gustchina, A., Wlodawer, A., Polikarpov, I.

(2007) J Mol Biology 369: 1029-1040

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Pol protein (protein)
Unique Ligands	3TL

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3E4R \| pdb_00003e4r	Download File View File

Crystal structure of the alkanesulfonate binding protein (SsuA) from the phytopathogenic bacteria Xanthomonas axonopodis pv. citri bound to HEPES

Balan, A., Araujo, F.T., Sanches, M., Chirgadze, D.Y., Blundell, T.B., Barbosa, J.A.R.G.

To be published

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Xanthomonas citri
Macromolecule	Nitrate transport protein (protein)
Unique Ligands	EPE

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3ER0 \| pdb_00003er0	Download File View File

Crystal structure of the full length eIF5A from Saccharomyces cerevisiae

Sanches, M., Dias, C.A.O., Aponi, L.H., Valentini, S.R., Guimaraes, B.

To be published

Released	2008-12-02
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Eukaryotic translation initiation factor 5A-2 (protein)

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4DDG \| pdb_00004ddg	Download File View File

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

Juang, Y.C., Sanches, M., Sicheri, F.

(2012) Mol Cell 45: 384-397

Released	2012-02-22
Method	X-RAY DIFFRACTION 3.2987 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-C (protein) Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1 (protein)

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4DDI \| pdb_00004ddi	Download File View File

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

Juang, Y.C., Sanches, M., Sicheri, F.

(2012) Mol Cell 45: 384-397

Released	2012-02-22
Method	X-RAY DIFFRACTION 3.802 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-C (protein) Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1 (protein)

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4PL3 \| pdb_00004pl3	Download File View File

Crystal structure of murine IRE1 in complex with MKC9989 inhibitor

Sanches, M., Duffy, N., Talukdar, M., Thevakumaran, N., Chiovitti, D., Al-awar, R., Patterson, J.B., Sicheri, F.

(2014) Nat Commun 5: 4202-4202

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	Serine/threonine-protein kinase/endoribonuclease IRE1 (protein)
Unique Ligands	31J, ADP, MG

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4PL4 \| pdb_00004pl4	Download File View File

Crystal structure of murine IRE1 in complex with OICR464 inhibitor

Sanches, M., Duffy, N., Talukdar, M., Thevakumaran, N., Chiovitti, D., Al-awar, R., Patterson, J.B., Sicheri, F.

(2014) Nat Commun 5: 4202-4202

Released	2014-09-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Serine/threonine-protein kinase/endoribonuclease IRE1 (protein)
Unique Ligands	31K, ADP, MG, PEU

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4PL5 \| pdb_00004pl5	Download File View File

Crystal structure of murine IRE1 in complex with OICR573 inhibitor

Sanches, M., Duffy, N., Talukdar, M., Thevakumaran, N., Chiovitti, D., Al-awar, R., Patterson, J.B., Sicheri, F.

(2014) Nat Commun 5: 4202-4202

Released	2014-09-03
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Mus musculus
Macromolecule	Serine/threonine-protein kinase/endoribonuclease IRE1 (protein)
Unique Ligands	31L, ADP, MG, PEU

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8FFJ \| pdb_00008ffj	Download File View File

Structure of Zanidatamab bound to HER2

Worrall, L.J., Atkinson, C.E., Sanches, M., Dixit, S., Strynadka, N.C.J.

(2023) Nat Commun 14: 1394-1394

Released	2023-02-22
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Homo sapiens
Macromolecule	Receptor tyrosine-protein kinase erbB-2 (protein) Zanidatamab Heavy Chain A (protein) Zanidatamab Heavy Chain B (protein) Zanidatamab Light Chain A (protein)

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1NNS | pdb_00001nns

L-asparaginase of E. coli in C2 space group and 1.95 A resolution

2O95 | pdb_00002o95

Crystal Structure of the Metal-Free Dimeric Human Mov34 MPN domain (residues 1-186)

2O96 | pdb_00002o96

Crystal Structure of the Metal-Free Dimeric Human Mov34 MPN domain (residues 1-177)

2P3A | pdb_00002p3a

Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor

2P3B | pdb_00002p3b

Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor

2P3C | pdb_00002p3c

Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor

2P3D | pdb_00002p3d

Crystal Structure of the multi-drug resistant mutant subtype F HIV protease complexed with TL-3 inhibitor

3E4R | pdb_00003e4r

Crystal structure of the alkanesulfonate binding protein (SsuA) from the phytopathogenic bacteria Xanthomonas axonopodis pv. citri bound to HEPES

3ER0 | pdb_00003er0

Crystal structure of the full length eIF5A from Saccharomyces cerevisiae

4DDG | pdb_00004ddg

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

4DDI | pdb_00004ddi

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

4PL3 | pdb_00004pl3

Crystal structure of murine IRE1 in complex with MKC9989 inhibitor

4PL4 | pdb_00004pl4

Crystal structure of murine IRE1 in complex with OICR464 inhibitor

4PL5 | pdb_00004pl5

Crystal structure of murine IRE1 in complex with OICR573 inhibitor

8FFJ | pdb_00008ffj

Structure of Zanidatamab bound to HER2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1NNS | pdb_00001nns

2O95 | pdb_00002o95

2O96 | pdb_00002o96

2P3A | pdb_00002p3a

2P3B | pdb_00002p3b

2P3C | pdb_00002p3c

2P3D | pdb_00002p3d

3E4R | pdb_00003e4r

3ER0 | pdb_00003er0

4DDG | pdb_00004ddg

4DDI | pdb_00004ddi

4PL3 | pdb_00004pl3

4PL4 | pdb_00004pl4

4PL5 | pdb_00004pl5

8FFJ | pdb_00008ffj