RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Sakakibara, E."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Pseudomonas aeruginosa PAO1 (10)
	Pseudomonas aeruginosa (1)

Taxonomy

Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (4)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

2020 - 2024 (11)

Symmetry Type

Asymmetric (11)

AllSelected

1 to 11 of 11 Structures

Page 1 of 1

Sort by

Explore in 3D

6JLG	Download File View File

Crystal Structure of HasAp with Co-9,10,19,20-Tetraphenylporphycene

Sakakibara, E., Shisaka, Y., Onoda, H., Sugimoto, H., Shiro, Y., Watanabe, Y., Shoji, O.

(2019) RSC Adv 9: 18697-18702

Released	2020-03-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Heme acquisition protein HasA (protein)
Unique Ligands	BWU, GOL, PO4

Explore in 3D

7EMP	Download File View File

Crystal Structure of HasAp Capturing Chromium Tetraphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	CXS, GOL, J7U, NHE, PO4

Explore in 3D

7EMQ	Download File View File

Crystal Structure of HasAp Capturing Manganese Tetraphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	CXS, GOL, J7X, NHE, PO4

Explore in 3D

7EMR	Download File View File

Crystal Structure of HasAp Capturing Cobalt Tetraphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	CXS, GOL, J83, NHE, PO4

Explore in 3D

7EMT	Download File View File

Crystal Structure of the HasAp V37G Mutant Capturing Iron Tetraphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	MQP

Explore in 3D

7EMU	Download File View File

Crystal Structure of the HasAp V37G Mutant Capturing Manganese Tetraphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	GOL, J7X

Explore in 3D

7EMV	Download File View File

Crystal Structure of the HasAp V37G Mutant Capturing Iron-5,10,15-Triphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	GOL, IMD, WXP

Explore in 3D

7EMW	Download File View File

Crystal Structure of the HasAp V37G/K59Q Mutant Capturing Iron Tetraphenylporphyrin

Shisaka, Y., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	GOL, MQP

Explore in 3D

7VF7	Download File View File

Crystal Structure of HasAp with Co-octaethylporphyrin

Takiguchi, A., Sakakibara, E., Sugimoto, H., Shoji, O., Shinokubo, H.

To be published

Released	2022-09-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	6KI, GOL, PEG

Explore in 3D

7VF8	Download File View File

Crystal Structure of HasAp with Co-5-octaethyloxaporphyrinium cation

Takiguchi, A., Sakakibara, E., Sugimoto, H., Shoji, O., Shinokubo, H.

To be published

Released	2022-09-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	7KI, CIT, GOL, PEG

Explore in 3D

7VM1	Download File View File

Crystal Structure of HasAp Capturing Iron Tetra(4-pyridyl)porphyrin

Shisaka, Y., Ueda, G., Sakakibara, E., Sugimoto, H., Shoji, O.

(2022) Chembiochem 23: e202200095-e202200095

Released	2022-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	7OH, GOL