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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Saigo, K."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Aliivibrio fischeri (3)
	Drosophila melanogaster (3)
	Homo sapiens (2)
	Escherichia coli (1)

Taxonomy

	Eukaryota (5)
	Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

	Protein (9)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (3)
	2010 - 2014 (4)

Enzyme Classification Name

	Oxidoreductases (4)
	Hydrolases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (4)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All alpha proteins (4)

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1 to 9 of 9 Structures

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1F5V \| pdb_00001f5v	Download File View File

STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION

Kobori, T., Sasaki, H., Lee, W.C., Zenno, S., Saigo, K., Murphy, M.E.P., Tanokura, M.

(2001) J Biological Chem 276: 2816-2823

Released	2001-02-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	OXYGEN-INSENSITIVE NADPH NITROREDUCTASE (protein)
Unique Ligands	FMN

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1V5Y \| pdb_00001v5y	Download File View File

Binding of coumarins to NAD(P)H:FMN oxidoreductase

Kobori, T., Koike, H., Sasaki, H., Zenno, S., Saigo, K., Tanokura, M.

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aliivibrio fischeri
Macromolecule	Major NAD(P)H-flavin oxidoreductase (protein)
Unique Ligands	4HC, FMN

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1V5Z \| pdb_00001v5z	Download File View File

Binding of coumarins to NAD(P)H:FMN oxidoreductase

Kobori, T., Koike, H., Sasaki, H., Zenno, S., Saigo, K., Tanokura, M.

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aliivibrio fischeri
Macromolecule	Major NAD(P)H-flavin oxidoreductase (protein)
Unique Ligands	2HC, FMN

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1VFR \| pdb_00001vfr	Download File View File

THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI

Koike, H., Sasaki, H., Kobori, T., Zenno, S., Saigo, K., Murphy, M.E.P., Adman, E.T., Tanokura, M.

(1998) J Mol Biology 280: 259-273

Released	1999-02-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aliivibrio fischeri
Macromolecule	NAD(P)H\:FMN OXIDOREDUCTASE (protein)
Unique Ligands	FMN

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2EB1 \| pdb_00002eb1	Download File View File

Crystal Structure of the C-Terminal RNase III Domain of Human Dicer

Takeshita, D., Zenno, S., Lee, W.C., Nagata, K., Saigo, K., Tanokura, M.

(2007) J Mol Biology 374: 106-120

Released	2007-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Endoribonuclease Dicer (protein)
Unique Ligands	MG

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3A01 \| pdb_00003a01	Download File View File

Crystal structure of Aristaless and Clawless homeodomains bound to DNA

Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.

(2010) EMBO J 29: 1613-1623

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	Homeobox protein aristaless (protein) Homeodomain-containing protein (protein) 5'-D(CPCPGPCPAPAPTPTPAPAPTPTPAPAPGPCPC)-3' (nucleic acid) 5'-D(GPGPCPTPTPAPAPTPTPAPAPTPTPGPCPGPG)-3' (nucleic acid)

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3A02 \| pdb_00003a02	Download File View File

Crystal structure of Aristaless homeodomain

Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.

(2010) EMBO J 29: 1613-1623

Released	2010-03-09
Method	X-RAY DIFFRACTION 1 Å
Organisms	Drosophila melanogaster
Macromolecule	Homeobox protein aristaless (protein)
Unique Ligands	CD, CL

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3A03 \| pdb_00003a03	Download File View File

Crystal structure of Hox11L1 homeodomain

Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.

(2010) EMBO J 29: 1613-1623

Released	2010-03-09
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	T-cell leukemia homeobox protein 2 (protein)
Unique Ligands	NA, SO4

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3LNQ \| pdb_00003lnq	Download File View File

Structure of Aristaless homeodomain in complex with DNA

Takamura, Y., Miyazono, K., Nagata, K., Saigo, K., Kojima, T., Tanokura, M.

(2010) EMBO J 29: 1613-1623

Released	2010-04-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Drosophila melanogaster
Macromolecule	Homeobox protein aristaless (protein) 5'-D(CPCPCPTPAPAPTPTPAPAPAPCPCPC)-3' (nucleic acid) 5'-D(GPGPGPTPTPTPAPAPTPTPAPGPGPG)-3' (nucleic acid)
Unique Ligands	ACT

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1F5V | pdb_00001f5v

STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION

1V5Y | pdb_00001v5y

Binding of coumarins to NAD(P)H:FMN oxidoreductase

1V5Z | pdb_00001v5z

Binding of coumarins to NAD(P)H:FMN oxidoreductase

1VFR | pdb_00001vfr

THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI

2EB1 | pdb_00002eb1

Crystal Structure of the C-Terminal RNase III Domain of Human Dicer

3A01 | pdb_00003a01

Crystal structure of Aristaless and Clawless homeodomains bound to DNA

3A02 | pdb_00003a02

Crystal structure of Aristaless homeodomain

3A03 | pdb_00003a03

Crystal structure of Hox11L1 homeodomain

3LNQ | pdb_00003lnq

Structure of Aristaless homeodomain in complex with DNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1F5V | pdb_00001f5v

1V5Y | pdb_00001v5y

1V5Z | pdb_00001v5z

1VFR | pdb_00001vfr

2EB1 | pdb_00002eb1

3A01 | pdb_00003a01

3A02 | pdb_00003a02

3A03 | pdb_00003a03

3LNQ | pdb_00003lnq