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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Nilsson, J."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (6)
	Thermus thermophilus (3)
	Saccharomyces cerevisiae S288C (2)
	Homo sapiens (1)

Taxonomy

	Eukaryota (9)
	Bacteria (3)

Experimental Method

	ELECTRON MICROSCOPY (5)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (9)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (2)
	3.5 - 4.0 (1)
	> 4.5 (5)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (2)
	2015 - 2019 (1)

Enzyme Classification Name

Hydrolases (5)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	All beta proteins (6)
	Alpha and beta proteins (a/b) (5)

AllSelected

1 to 9 of 9 Structures

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1TRJ \| pdb_00001trj	Download File View File

Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome

Sengupta, J., Nilsson, J., Gursky, R., Spahn, C.M., Nissen, P., Frank, J.

(2004) Nat Struct Mol Biol 11: 957-962

Released	2004-09-28
Method	ELECTRON MICROSCOPY 11.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Guanine nucleotide-binding protein beta subunit-like protein (protein) Helix 39 of 18S rRNA (nucleic acid) Helix 40 of 18S rRNA (nucleic acid)

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1U2R \| pdb_00001u2r	Download File View File

Crystal Structure of ADP-ribosylated Ribosomal Translocase from Saccharomyces cerevisiae

Jorgensen, R., Yates, S.P., Nilsson, J., Prentice, G.A., Teal, D.J., Merrill, A.R., Andersen, G.R.

(2004) J Biological Chem 279: 45919-45925

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Elongation factor 2 (protein)
Unique Ligands	APR, GDP, MG, SO1

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2P8W \| pdb_00002p8w	Download File View File

Fitted structure of eEF2 in the 80S:eEF2:GDPNP cryo-EM reconstruction

Taylor, D.J., Nilsson, J., Merrill, A.R., Andersen, G.R., Nissen, P., Frank, J.

(2007) EMBO J 26: 2421-2431

Released	2007-05-08
Method	ELECTRON MICROSCOPY 11.3 Å
Organisms	Saccharomyces cerevisiae Thermus thermophilus
Macromolecule	Elongation factor 2 (protein) Elongation factor Tu-B (protein)
Unique Ligands	GNP

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2P8X \| pdb_00002p8x	Download File View File

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP cryo-EM reconstruction

Taylor, D.J., Nilsson, J., Merrill, A.R., Andersen, G.R., Nissen, P., Frank, J.

(2007) EMBO J 26: 2421-2431

Released	2007-05-08
Method	ELECTRON MICROSCOPY 9.7 Å
Organisms	Saccharomyces cerevisiae Thermus thermophilus
Macromolecule	Elongation factor 2 (protein) Elongation factor Tu-B (protein)
Unique Ligands	APR, GNP

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2P8Y \| pdb_00002p8y	Download File View File

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDP:sordarin cryo-EM reconstruction

Taylor, D.J., Nilsson, J., Merrill, A.R., Andersen, G.R., Nissen, P., Frank, J.

(2007) EMBO J 26: 2421-2431

Released	2007-05-08
Method	ELECTRON MICROSCOPY 11.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Elongation factor 2 (protein)
Unique Ligands	APR, GDP, SO1

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2P8Z \| pdb_00002p8z	Download File View File

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP:sordarin cryo-EM reconstruction

Taylor, D.J., Nilsson, J., Merrill, A.R., Andersen, G.R., Nissen, P., Frank, J.

(2007) EMBO J 26: 2421-2431

Released	2007-05-08
Method	ELECTRON MICROSCOPY 8.9 Å
Organisms	Saccharomyces cerevisiae Thermus thermophilus
Macromolecule	Elongation factor 2 (protein) Elongation factor Tu-B (protein)
Unique Ligands	APR, GNP, SO1

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3RFG \| pdb_00003rfg	Download File View File

Crystal structure of the yeast RACK1 dimer in space group P63

Yatime, L., Hein, K.L., Nilsson, J., Nissen, P.

(2011) J Mol Biology 411: 486-498

Released	2011-07-06
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Guanine nucleotide-binding protein subunit beta-like protein (protein)

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3RFH \| pdb_00003rfh	Download File View File

Crystal structure of the yeast RACK1 dimer in space group P21

Yatime, L., Hein, K.L., Nilsson, J., Nissen, P.

(2011) J Mol Biology 411: 486-498

Released	2011-07-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Guanine nucleotide-binding protein subunit beta-like protein (protein)

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6R8I \| pdb_00006r8i	Download File View File

PP4R3A EVH1 domain bound to FxxP motif

Ueki, Y., Kruse, T., Weisser, M.B., Sundell, G.N., Yoo Larsen, M.S., Lopez Mendez, B., Jenkins, N.P., Garvanska, D.H., Cressey, L., Zhang, G., Davey, N., Montoya, G., Ivarsson, Y., Kettenbach, A., Nilsson, J.

(2019) Mol Cell 76: 953

Released	2019-10-16
Method	X-RAY DIFFRACTION 1.517 Å
Organisms	Homo sapiens
Macromolecule	SER-LEU-PRO-PHE-THR-PHE-LYS-VAL-PRO-ALA-PRO-PRO-PRO-SER-LEU-PRO-PRO-SER (protein) Serine/threonine-protein phosphatase 4 regulatory subunit 3A (protein)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1TRJ | pdb_00001trj

Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome

1U2R | pdb_00001u2r

Crystal Structure of ADP-ribosylated Ribosomal Translocase from Saccharomyces cerevisiae

2P8W | pdb_00002p8w

Fitted structure of eEF2 in the 80S:eEF2:GDPNP cryo-EM reconstruction

2P8X | pdb_00002p8x

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP cryo-EM reconstruction

2P8Y | pdb_00002p8y

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDP:sordarin cryo-EM reconstruction

2P8Z | pdb_00002p8z

Fitted structure of ADPR-eEF2 in the 80S:ADPR-eEF2:GDPNP:sordarin cryo-EM reconstruction

3RFG | pdb_00003rfg

Crystal structure of the yeast RACK1 dimer in space group P63

3RFH | pdb_00003rfh

Crystal structure of the yeast RACK1 dimer in space group P21

6R8I | pdb_00006r8i

PP4R3A EVH1 domain bound to FxxP motif

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1TRJ | pdb_00001trj

1U2R | pdb_00001u2r

2P8W | pdb_00002p8w

2P8X | pdb_00002p8x

2P8Y | pdb_00002p8y

2P8Z | pdb_00002p8z

3RFG | pdb_00003rfg

3RFH | pdb_00003rfh

6R8I | pdb_00006r8i