RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Meinnel, T."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Homo sapiens (24)
	Arabidopsis thaliana (17)
	Streptococcus agalactiae (12)
	Escherichia coli (5)
	synthetic construct (4)
	Vibrio phage VP16T (3)
	unidentified (3)
	Pseudomonas aeruginosa (1)

Taxonomy

	Eukaryota (40)
	Bacteria (16)
	other sequences (4)
	Duplodnaviria (3)
	unclassified sequences (3)

Experimental Method

	X-RAY DIFFRACTION (57)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (59)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (22)
	2.0 - 2.5 (23)
	2.5 - 3.0 (7)
	3.0 - 3.5 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (2)
	2005 - 2009 (3)
	2010 - 2014 (13)
	2015 - 2019 (19)
	2020 - 2024 (20)

Enzyme Classification Name

	Transferases (24)
	Hydrolases (32)
	Oxidoreductases (7)

Symmetry Type

	Asymmetric (53)
	Cyclic (12)

SCOP Classification

	Alpha and beta proteins (a+b) (19)
	Artifacts (5)

AllSelected

1 to 25 of 59 Structures

Page 1 of 3

Sort by

Explore in 3D

1DEF \| pdb_00001def	Download File View File

PEPTIDE DEFORMYLASE CATALYTIC CORE (RESIDUES 1-147), NMR, 9 STRUCTURES

Meinnel, T., Dardel, F.

(1996) J Mol Biology 262: 375-386

Released	1997-04-21
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PEPTIDE DEFORMYLASE (protein)
Unique Ligands	ZN

Explore in 3D

1LRU \| pdb_00001lru	Download File View File

Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinonin

Guilloteau, J.-P., Mathieu, M., Giglione, C., Blanc, V., Dupuy, A., Chevrier, M., Gil, P., Famechon, A., Meinnel, T., Mikol, V.

(2002) J Mol Biology 320: 951-962

Released	2002-07-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	PEPTIDE DEFORMYLASE (protein)
Unique Ligands	BB2, SO4, ZN

Explore in 3D

1LRY \| pdb_00001lry	Download File View File

Crystal Structure of P. aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin

Guilloteau, J.-P., Mathieu, M., Giglione, C., Blanc, V., Dupuy, A., Chevrier, M., Gil, P., Famechon, A., Meinnel, T., Mikol, V.

(2002) J Mol Biology 320: 951-962

Released	2002-07-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PEPTIDE deformylase (protein)
Unique Ligands	BB2, ZN

Explore in 3D

1ZXZ \| pdb_00001zxz	Download File View File

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-5000 MME as precipitant

Fieulaine, S., Juillan-Binard, C., Serero, A., Dardel, F., Giglione, C., Meinnel, T., Ferrer, J.-L.

(2005) J Biological Chem 280: 42315-42324

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase, mitochondrial (protein)
Unique Ligands	ZN

Explore in 3D

1ZY0 \| pdb_00001zy0	Download File View File

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A); crystals grown in PEG-6000

Fieulaine, S., Juillan-Binard, C., Serero, A., Dardel, F., Giglione, C., Meinnel, T., Ferrer, J.-L.

(2005) J Biological Chem 280: 42315-42324

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase, mitochondrial (protein)
Unique Ligands	ZN

Explore in 3D

1ZY1 \| pdb_00001zy1	Download File View File

X-ray structure of peptide deformylase from Arabidopsis thaliana (AtPDF1A) in complex with Met-Ala-Ser

Fieulaine, S., Juillan-Binard, C., Serero, A., Dardel, F., Giglione, C., Meinnel, T., Ferrer, J.-L.

(2005) J Biological Chem 280: 42315-42324

Released	2005-09-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase, mitochondrial (protein) tripeptide fragment (protein)
Unique Ligands	ZN

Explore in 3D

2DEF \| pdb_00002def	Download File View File

PEPTIDE DEFORMYLASE CATALYTIC CORE (RESIDUES 1-147), NMR, 20 STRUCTURES

Meinnel, T., Dardel, F.

(1998) J Mol Biology 280: 501-513

Released	1998-03-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PEPTIDE DEFORMYLASE (protein)
Unique Ligands	NI

Explore in 3D

3M6O \| pdb_00003m6o	Download File View File

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B)

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-03-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B (protein)
Unique Ligands	ZN

Explore in 3D

3M6P \| pdb_00003m6p	Download File View File

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with actinonin

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-03-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B (protein)
Unique Ligands	BB2, ZN

Explore in 3D

3M6Q \| pdb_00003m6q	Download File View File

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41Q mutant in complex with actinonin

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B (protein)
Unique Ligands	BB2, ZN

Explore in 3D

3M6R \| pdb_00003m6r	Download File View File

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41M mutant in complex with actinonin

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B (protein)
Unique Ligands	BB2, ZN

Explore in 3D

3O3J \| pdb_00003o3j	Download File View File

Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with inhibitor 6b

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-06-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B (protein)
Unique Ligands	BB4, ZN

Explore in 3D

3PN2 \| pdb_00003pn2	Download File View File

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) (crystallized in PEG-550-MME)

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-06-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B, chloroplastic (protein)
Unique Ligands	ZN

Explore in 3D

3PN3 \| pdb_00003pn3	Download File View File

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with inhibitor 21

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B, chloroplastic (protein)
Unique Ligands	PN3, ZN

Explore in 3D

3PN4 \| pdb_00003pn4	Download File View File

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with actinonin (crystallized in PEG-550-MME)

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B, chloroplastic (protein)
Unique Ligands	BB2, ZN

Explore in 3D

3PN5 \| pdb_00003pn5	Download File View File

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41Q mutant

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-06-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B, chloroplastic (protein)
Unique Ligands	ZN

Explore in 3D

3PN6 \| pdb_00003pn6	Download File View File

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) G41M mutant

Fieulaine, S., Meinnel, T., Giglione, C.

(2011) PLoS Biol 9: e1001066-e1001066

Released	2011-06-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1B, chloroplastic (protein)
Unique Ligands	ZN

Explore in 3D

4JE6 \| pdb_00004je6	Download File View File

Crystal structure of a human-like mitochondrial peptide deformylase

Fieulaine, S., Meinnel, T., Giglione, C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 242-252

Released	2014-02-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1A, chloroplastic/mitochondrial (protein)
Unique Ligands	ZN

Explore in 3D

4JE7 \| pdb_00004je7	Download File View File

Crystal structure of a human-like mitochondrial peptide deformylase in complex with actinonin

Fieulaine, S., Meinnel, T., Giglione, C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 242-252

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1A, chloroplastic/mitochondrial (protein)
Unique Ligands	BB2, ZN

Explore in 3D

4JE8 \| pdb_00004je8	Download File View File

Crystal structure of a human-like mitochondrial peptide deformylase in complex with Met-Ala-Ser

Fieulaine, S., Meinnel, T., Giglione, C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 242-252

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Arabidopsis thaliana
Macromolecule	Peptide deformylase 1A, chloroplastic/mitochondrial (protein) tripeptide Met-Ala-Ser (protein)
Unique Ligands	ZN

Explore in 3D

5JEX \| pdb_00005jex	Download File View File

Crystal structure of type 2 PDF from Streptococcus agalactiae, crystallized in imidazole buffer

Fieulaine, S., Giglione, C., Meinnel, T.

(2016) Sci Rep 6: 35429-35429

Released	2016-11-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus agalactiae
Macromolecule	Peptide deformylase (protein)
Unique Ligands	IMD, ZN

Explore in 3D

5JEY \| pdb_00005jey	Download File View File

Crystal structure of type 2 PDF from Streptococcus agalactiae, crystallized in cacodylate buffer

Fieulaine, S., Giglione, C., Meinnel, T.

(2016) Sci Rep 6: 35429-35429

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus agalactiae
Macromolecule	Peptide deformylase (protein)
Unique Ligands	NI

Explore in 3D

5JEZ \| pdb_00005jez	Download File View File

Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with tripeptide Met-Ala-Ser

Fieulaine, S., Giglione, C., Meinnel, T.

(2016) Sci Rep 6: 35429-35429

Released	2016-11-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli Streptococcus agalactiae
Macromolecule	Met-Ala-Ser (protein) Peptide deformylase (protein)
Unique Ligands	ACT, ZN

Explore in 3D

5JF0 \| pdb_00005jf0	Download File View File

Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with tripeptide Met-Ala-Arg

Fieulaine, S., Giglione, C., Meinnel, T.

(2016) Sci Rep 6: 35429-35429

Released	2016-11-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli Streptococcus agalactiae
Macromolecule	MET-ALA-ARG (protein) Peptide deformylase (protein)
Unique Ligands	ACT, NI