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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Medical Structural Genomics of Pathogenic Protozoa (MSGPP)"

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Entamoeba histolytica (5)
	Leishmania major (5)
	Toxoplasma gondii (5)
	Cryptosporidium parvum Iowa II (4)
	Trypanosoma brucei (4)
	Plasmodium vivax (3)
	Giardia lamblia ATCC 50803 (2)
	Trypanosoma cruzi (2)
	Chromohalobacter israelensis DSM 3043 (1)
	Leishmania donovani (1)

More...

Taxonomy

	Eukaryota (35)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (13)
	2.5 - 3.0 (6)
	3.0 - 3.5 (6)

Release Date

	2005 - 2009 (14)
	2010 - 2014 (21)
	2015 - 2019 (1)

Enzyme Classification Name

	Ligases (16)
	Transferases (8)
	Lyases (4)
	Hydrolases (2)
	Isomerases (1)
	Oxidoreductases (2)

Symmetry Type

	Cyclic (16)
	Asymmetric (14)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	Alpha and beta proteins (a+b) (8)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 36 Structures

Page 1 of 2

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3E8J \| pdb_00003e8j	Download File View File

Coproporphyrinogen III oxidase from Leishmania naiffi

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Leishmania naiffi
Macromolecule	COPROPORPHYRINOGEN III OXIDASE (protein)
Unique Ligands	ACT, GOL

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3EJO \| pdb_00003ejo	Download File View File

Coproporphyrinogen III oxidase from Leishmania donovani

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2008-10-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Leishmania donovani
Macromolecule	Coproporphyrinogen III oxidase (protein)
Unique Ligands	ACT

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3F75 \| pdb_00003f75	Download File View File

Activated Toxoplasma gondii cathepsin L (TgCPL) in complex with its propeptide

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2009) J Biological Chem 284: 26839-26850

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Toxoplasma gondii RH
Macromolecule	Cathepsin L Propeptide (protein) Cathepsin L Protease (protein)
Unique Ligands	BR, CL, EDO

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3FOC \| pdb_00003foc	Download File View File

Tryptophanyl-tRNA synthetase from Giardia lamblia

Arakaki, T.L., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) J Struct Biol 171: 238-243

Released	2009-01-13
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Giardia lamblia ATCC 50803
Macromolecule	Tryptophanyl-tRNA synthetase (protein)
Unique Ligands	GOL, SO4

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3HFD \| pdb_00003hfd	Download File View File

Nucleosome Assembly Protein 1 from Plasmodium knowlesi

Arakaki, T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2009-05-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Plasmodium knowlesi strain H
Macromolecule	Nucleosome assembly protein 1 (protein)

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3HRI \| pdb_00003hri	Download File View File

Histidyl-tRNA synthetase (apo) from Trypanosoma brucei

Arakaki, T.L., Merritt, E.A., Larson, E.T., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) J Mol Biology 397: 481-494

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Trypanosoma brucei
Macromolecule	Histidyl-tRNA synthetase (protein)

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3HRK \| pdb_00003hrk	Download File View File

Histidyl-tRNA synthetase from Trypanosoma cruzi (Histidyl-adenylate complex)

Arakaki, T.L., Merritt, E.A., Larson, E.T., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) J Mol Biology 397: 481-494

Released	2009-12-01
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Trypanosoma cruzi
Macromolecule	Histidyl-tRNA synthetase (protein)
Unique Ligands	CL, HAM

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3HV0 \| pdb_00003hv0	Download File View File

Tryptophanyl-tRNA synthetase from Cryptosporidium parvum

Arakaki, T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2011) Mol Biochem Parasitol 177: 20-28

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Cryptosporidium parvum Iowa II
Macromolecule	Tryptophanyl-tRNA synthetase (protein)
Unique Ligands	TRP

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3HZR \| pdb_00003hzr	Download File View File

Tryptophanyl-tRNA synthetase homolog from Entamoeba histolytica

Arakaki, T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2011) Mol Biochem Parasitol 177: 20-28

Released	2009-07-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Entamoeba histolytica
Macromolecule	Tryptophanyl-tRNA synthetase (protein)

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3I05 \| pdb_00003i05	Download File View File

Tryptophanyl-tRNA synthetase from Trypanosoma brucei

Arakaki, T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2011) Mol Biochem Parasitol 177: 20-28

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Trypanosoma brucei
Macromolecule	Tryptophanyl-tRNA synthetase (protein)

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3I79 \| pdb_00003i79	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1)

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) Nat Struct Mol Biol 17: 602-607

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	EDO

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3I7B \| pdb_00003i7b	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with bumped kinase inhibitor NM-PP1

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) Nat Struct Mol Biol 17: 602-607

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.988 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	BK1, DMS, EDO

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3I7C \| pdb_00003i7c	Download File View File

Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with bumped kinase inhibitor NA-PP2

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) Nat Struct Mol Biol 17: 602-607

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Toxoplasma gondii
Macromolecule	Calmodulin-domain protein kinase 1 (protein)
Unique Ligands	BK2

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3I7F \| pdb_00003i7f	Download File View File

Aspartyl tRNA synthetase from Entamoeba histolytica

Arakaki, T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) Mol Biochem Parasitol 169: 95-100

Released	2009-07-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Entamoeba histolytica
Macromolecule	Aspartyl-tRNA synthetase (protein)

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3IAL \| pdb_00003ial	Download File View File

Giardia lamblia Prolyl-tRNA synthetase in complex with prolyl-adenylate

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa, Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2012) Acta Crystallogr D Biol Crystallogr 68: 1194-1200

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Giardia lamblia ATCC 50803
Macromolecule	Prolyl-tRNA synthetase (protein)
Unique Ligands	GOL, PR8

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3KFL \| pdb_00003kfl	Download File View File

Leishmania major methionyl-tRNA synthetase in complex with methionyladenylate and pyrophosphate

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2011) Biochimie 93: 570-582

Released	2010-10-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Leishmania major
Macromolecule	Methionyl-tRNA synthetase (protein)
Unique Ligands	EDO, FMT, ME8, MG, POP, ZN

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3KKK \| pdb_00003kkk	Download File View File

Y92C catalytic residue mutant of Phosphoglycerate Mutase from Plasmodium falciparum

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa, Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2009-11-17
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Phosphoglycerate mutase (protein)

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3LC0 \| pdb_00003lc0	Download File View File

Histidyl-tRNA synthetase from Trypanosoma cruzi (Histidine complex)

Merritt, E.A., Larson, E.T., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

(2010) J Mol Biology 397: 481-494

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trypanosoma cruzi
Macromolecule	Histidyl-tRNA synthetase (protein)
Unique Ligands	HIS

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3LSQ \| pdb_00003lsq	Download File View File

Trypanosoma brucei seryl-tRNA synthetase

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma brucei
Macromolecule	Seryl-tRNA synthetase (protein)
Unique Ligands	MLI, NA

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3LSS \| pdb_00003lss	Download File View File

Trypanosoma brucei seryl-tRNA synthetase in complex with ATP

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma brucei
Macromolecule	Seryl-tRNA synthetase (protein)
Unique Ligands	ATP, MLI, NA

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3LX3 \| pdb_00003lx3	Download File View File

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS) in complex with xanthopterin

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Plasmodium vivax
Macromolecule	6-pyruvoyl tetrahydrobiopterin synthase (protein)
Unique Ligands	XTN, ZN

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3LZE \| pdb_00003lze	Download File View File

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS), E37C catalytic residue mutant

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium vivax
Macromolecule	Putative 6-pyruvoyl tetrahydrobiopterin synthase (protein)
Unique Ligands	PE0, ZN

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3M0N \| pdb_00003m0n	Download File View File

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS), E37A catalytic residue mutant

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium vivax
Macromolecule	Putative 6-pyruvoyl tetrahydrobiopterin synthase (protein)
Unique Ligands	PE0, ZN

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3M4P \| pdb_00003m4p	Download File View File

Entamoeba histolytica asparaginyl-tRNA synthetase (AsnRS) in complex with asparaginyl-adenylate

Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Entamoeba histolytica
Macromolecule	Asparaginyl-tRNA synthetase, putative (protein)
Unique Ligands	4AD, GOL, SO4