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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Magnussen, H.M."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (8)
	Felis catus (3)
	Xenopus tropicalis (2)
	Danio rerio (1)

Taxonomy

Eukaryota (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)

Release Date

2020 - 2024 (11)

Enzyme Classification Name

	Transferases (10)
	Ligases (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	Artifacts (3)

AllSelected

1 to 11 of 11 Structures

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6SQO \| pdb_00006sqo	Download File View File

Crystal structure of human MDM2 RING domain homodimer bound to UbcH5B-Ub

Magnussen, H.M., Ahmed, S.F., Huang, D.T.

(2020) Nat Commun 11: 2094-2094

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein) Ubiquitin-40S ribosomal protein S27a (protein) Ubiquitin-conjugating enzyme E2 D2 (protein)
Unique Ligands	CL, NO3, ZN

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6SQP \| pdb_00006sqp	Download File View File

Crystal structure of Cat MDM2-S429E RING domain homodimer

Magnussen, H.M., Ahmed, S.F., Huang, D.T.

(2020) Nat Commun 11: 2094-2094

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.21 Å
Organisms	Felis catus
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	CL, NO3, ZN

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6SQR \| pdb_00006sqr	Download File View File

Crystal structure of Cat MDM2-S429E RING domain bound to UbcH5B-Ub

Magnussen, H.M., Ahmed, S.F., Huang, D.T.

(2020) Nat Commun 11: 2094-2094

Released	2020-05-06
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Felis catus Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	EDO, NO3, ZN

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6SQS \| pdb_00006sqs	Download File View File

Crystal structure of cat phospho-Ser429 MDM2 RING domain bound to UbcH5B-Ub

Magnussen, H.M., Ahmed, S.F., Huang, D.T.

(2020) Nat Commun 11: 2094-2094

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Felis catus Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein) Ubiquitin-40S ribosomal protein S27a (protein) Ubiquitin-conjugating enzyme E2 D2 (protein)
Unique Ligands	ZN

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7AH2 \| pdb_00007ah2	Download File View File

Crystal structure of Zebrafish MDM2 RING domain homodimer

Magnussen, H.M., Huang, D.T.

(2021) J Mol Biology 433: 166807-166807

Released	2021-01-20
Method	X-RAY DIFFRACTION 2.872 Å
Organisms	Danio rerio
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	ZN

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7AHY \| pdb_00007ahy	Download File View File

Crystal structure of Western clawed frog MDM2 RING domain homodimer

Magnussen, H.M., Huang, D.T.

(2021) J Mol Biology 433: 166807-166807

Released	2021-01-20
Method	X-RAY DIFFRACTION 2.532 Å
Organisms	Xenopus tropicalis
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	ZN

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7AHZ \| pdb_00007ahz	Download File View File

Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub

Magnussen, H.M., Huang, D.T.

(2021) J Mol Biology 433: 166807-166807

Released	2021-01-20
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens Xenopus tropicalis
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein) Polyubiquitin-B (protein) Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) (protein)
Unique Ligands	CL, ZN

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7AI0 \| pdb_00007ai0	Download File View File

Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 1)

Magnussen, H.M., Huang, D.T.

(2021) J Mol Biology 433: 166807-166807

Released	2021-01-20
Method	X-RAY DIFFRACTION 1.559 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein) Polyubiquitin-B (protein) Ubiquitin-conjugating enzyme E2 D2 (protein)
Unique Ligands	CL, EDO, ZN

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7AI1 \| pdb_00007ai1	Download File View File

Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 2)

Magnussen, H.M., Huang, D.T.

(2021) J Mol Biology 433: 166807-166807

Released	2021-01-20
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein) Polyubiquitin-B (protein) Ubiquitin-conjugating enzyme E2 D2 (protein)
Unique Ligands	CL, EDO, ZN

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8BZR \| pdb_00008bzr	Download File View File

UFC1-UFM1 conjugate

Magnussen, H.M., Kulathu, Y.

(2024) Nature 627: 437-444

Released	2023-12-27
Method	X-RAY DIFFRACTION 1.781 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-fold modifier 1 (protein) Ubiquitin-fold modifier-conjugating enzyme 1 (protein)
Unique Ligands	EDO

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8C0D \| pdb_00008c0d	Download File View File

UFL1/DDRGK1 bound to UFC1

Magnussen, H.M., Kulathu, Y.

(2024) Nature 627: 437-444

Released	2023-12-27
Method	X-RAY DIFFRACTION 2.564 Å
Organisms	Homo sapiens
Macromolecule	DDRGK domain-containing protein 1 (protein) E3 UFM1-protein ligase 1 (protein) Ubiquitin-fold modifier-conjugating enzyme 1 (protein)

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6SQO | pdb_00006sqo

Crystal structure of human MDM2 RING domain homodimer bound to UbcH5B-Ub

6SQP | pdb_00006sqp

Crystal structure of Cat MDM2-S429E RING domain homodimer

6SQR | pdb_00006sqr

Crystal structure of Cat MDM2-S429E RING domain bound to UbcH5B-Ub

6SQS | pdb_00006sqs

Crystal structure of cat phospho-Ser429 MDM2 RING domain bound to UbcH5B-Ub

7AH2 | pdb_00007ah2

Crystal structure of Zebrafish MDM2 RING domain homodimer

7AHY | pdb_00007ahy

Crystal structure of Western clawed frog MDM2 RING domain homodimer

7AHZ | pdb_00007ahz

Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub

7AI0 | pdb_00007ai0

Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 1)

7AI1 | pdb_00007ai1

Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 2)

8BZR | pdb_00008bzr

UFC1-UFM1 conjugate

8C0D | pdb_00008c0d

UFL1/DDRGK1 bound to UFC1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6SQO | pdb_00006sqo

6SQP | pdb_00006sqp

6SQR | pdb_00006sqr

6SQS | pdb_00006sqs

7AH2 | pdb_00007ah2

7AHY | pdb_00007ahy

7AHZ | pdb_00007ahz

7AI0 | pdb_00007ai0

7AI1 | pdb_00007ai1

8BZR | pdb_00008bzr

8C0D | pdb_00008c0d