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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Luque, D."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Homo sapiens (8)
	Escherichia coli K-12 (5)
	Rotavirus (4)
	Bat circovirus (3)
	Minute virus of mice (3)
	Escherichia phage T7 (2)
	Human picobirnavirus (2)
	Mus musculus (2)
	Tequintavirus T5 (2)
	Brevibacterium linens (1)

More...

Taxonomy

	Riboviria (11)
	Eukaryota (10)
	Bacteria (6)
	Monodnaviria (6)
	Duplodnaviria (4)

Experimental Method

	ELECTRON MICROSCOPY (28)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (37)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (9)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)
	4.0 - 4.5 (4)
	> 4.5 (9)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (8)
	2020 - 2024 (22)

Enzyme Classification Name

Hydrolases (3)

Membrane Protein Annotation

MemProtMD (2)

Symmetry Type

	Icosahedral (17)
	Asymmetric (10)
	Cyclic (6)
	Dihedral (4)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 25 of 37 Structures

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2XVR \| pdb_00002xvr	Download File View File

Phage T7 empty mature head shell

Ionel, A., Velazquez-Muriel, J.A., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.

(2011) J Biological Chem 286: 234

Released	2010-12-01
Method	ELECTRON MICROSCOPY 10.8 Å
Organisms	Escherichia phage T7
Macromolecule	MAJOR CAPSID PROTEIN 10A (protein)

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3GF5 \| pdb_00003gf5	Download File View File

Crystal structure of the P21 R1-R7 N-terminal domain of murine MVP

Querol-Audi, J., Casanas, A., Luque, D., Caston, J.R., Fita, I., Verdaguer, N.

(2009) EMBO J 28: 3450-3457

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Major vault protein (protein)
Unique Ligands	GOL

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3GNF \| pdb_00003gnf	Download File View File

P1 Crystal structure of the N-terminal R1-R7 of murine MVP

Querol-Audi, J., Casanas, A., Uson, I., Luque, D., Caston, J.R., Fita, I., Verdaguer, N.

(2009) EMBO J 28: 3450-3457

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Major vault protein (protein)

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3IZG \| pdb_00003izg	Download File View File

Bacteriophage T7 prohead shell EM-derived atomic model

Ionel, A., Velazquez-Muriel, J.A., Agirrezabala, X., Luque, D., Cuervo, A., Caston, J.R., Valpuesta, J.M., Martin-Benito, J., Carrascosa, J.L.

(2011) J Biological Chem 286: 234-242

Released	2010-11-17
Method	ELECTRON MICROSCOPY 10.9 Å
Organisms	Escherichia phage T7
Macromolecule	Major capsid protein 10A (protein)

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3J3I \| pdb_00003j3i	Download File View File

Penicillium chrysogenum virus (PcV) capsid structure

Luque, D., Gomez-Blanco, J., Garriga, D., Brilot, A., Gonzalez, J.M., Havens, W.H., Carrascosa, J.L., Trus, B.L., Verdaguer, N., Grigorieff, N., Ghabrial, S.A., Caston, J.R.

(2014) Proc Natl Acad Sci U S A 111: 7641-7646

Released	2014-05-14
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Penicillium chrysogenum virus (isolate Caston)
Macromolecule	Capsid protein (protein)

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3TN9 \| pdb_00003tn9	Download File View File

X-ray structure of the HRV2 empty capsid (B-particle)

Garriga, D., Pickl-Herk, A., Luque, D., Wruss, J., Caston, J.R., Blaas, D., Verdaguer, N.

(2012) PLoS Pathog 8: e1002473-e1002473

Released	2012-03-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	rhinovirus A2
Macromolecule	Protein VP1 (protein) Protein VP2 (protein) Protein VP3 (protein)

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3ZUE \| pdb_00003zue	Download File View File

Rabbit Hemorrhagic Disease Virus (RHDV)capsid protein

Luque, D., Gonzalez, J.M., Gomez-Blanco, J., Marabini, R., Chichon, J., Mena, I., Angulo, I., Carrascosa, J.L., Verdaguer, N., Trus, B.L., Barcena, J., Caston, J.R.

(2012) J Virol 86: 6470

Released	2012-05-23
Method	ELECTRON MICROSCOPY 10.3 Å
Organisms	Rabbit hemorrhagic disease virus
Macromolecule	CAPSID STRUCTURAL PROTEIN VP60 (protein)

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4UW7 \| pdb_00004uw7	Download File View File

Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber without its intra-molecular chaperone domain

Garcia-Doval, C., Luque, D., Caston, J.R., Otero, J.M., Llamas-Saiz, A.L., Boulanger, P., van Raaij, M.J.

(2015) Viruses 7: 6424-6440

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Tequintavirus T5
Macromolecule	L-SHAPED TAIL FIBER PROTEIN (protein)
Unique Ligands	GOL

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4UW8 \| pdb_00004uw8	Download File View File

Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber with its intra-molecular chaperone domain

Garcia-Doval, C., Luque, D., Caston, J.R., Otero, J.M., Llamas-Saiz, A.L., Boulanger, P., van Raaij, M.J.

(2015) Viruses 7: 6424-6440

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Tequintavirus T5
Macromolecule	L-SHAPED TAIL FIBER PROTEIN (protein)
Unique Ligands	FLC

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4ZIQ \| pdb_00004ziq	Download File View File

Crystal structure of trypsin activated alpha-2-macroglobulin from Escherichia coli.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli K-12
Macromolecule	Uncharacterized lipoprotein YfhM (protein)
Unique Ligands	CL, GOL

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4ZIU \| pdb_00004ziu	Download File View File

Crystal structure of native alpha-2-macroglobulin from Escherichia coli spanning the residues from domain MG7 to the C-terminus.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Uncharacterized lipoprotein YfhM (protein)
Unique Ligands	GOL, NI

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4ZJG \| pdb_00004zjg	Download File View File

Crystal structure of native alpha-2-macroglobulin from Escherichia coli spanning domains MG0-NIE-MG1.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	alpha-2-Macroglobulin (protein)
Unique Ligands	1PE, GOL, PEG, PG4, PGE

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4ZJH \| pdb_00004zjh	Download File View File

Crystal structure of native alpha-2-macroglobulin from Escherichia coli spanning domains NIE-MG1.

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, X.F.

(2015) Proc Natl Acad Sci U S A 112: 8290-8295

Released	2015-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	alpha-2-Macroglobulin (protein)
Unique Ligands	ACT, GOL

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5A42 \| pdb_00005a42	Download File View File

Cryo-EM single particle 3D reconstruction of the native conformation of E. coli alpha-2-macroglobulin (ECAM)

Garcia-Ferrer, I., Arede, P., Gomez-Blanco, J., Luque, D., Duquerroy, S., Caston, J.R., Goulas, T., Gomis-Ruth, F.X.

(2015) Proc Natl Acad Sci U S A 112: 8290

Released	2015-07-29
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Escherichia coli K-12
Macromolecule	UNCHARACTERIZED LIPOPROTEIN YFHM (protein)

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5ND1 \| pdb_00005nd1	Download File View File

Viral evolution results in multiple, surface-allocated enzymatic activities in a fungal double-stranded RNA virus

Mata, C.P., Luque, D., Gomez Blanco, J., Rodriguez, J.M., Suzuki, N., Ghabrial, S.A., Carrascosa, J.L., Trus, B.L., Caston, J.R.

(2017) PLoS Pathog 13: e1006755-e1006755

Released	2017-11-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Rosellinia necatrix quadrivirus 1
Macromolecule	Capsid protein (protein)

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6RPK \| pdb_00006rpk	Download File View File

non-expanded bat circovirus with DNA VLP

Forwood, J.K., Luque, D., Mata, C.P., Das, S., Raidal, S.

To be published

Released	2020-11-25
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Bat circovirus
Macromolecule	Capsid protein (protein)

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6RPL \| pdb_00006rpl	Download File View File

Expanded bat circovirus with DNA VLP

Forwood, J.K., Luque, D., Mata, C.P., Das, S., Raidal, S.

To be published

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.85 Å
Organisms	Bat circovirus
Macromolecule	Capsid protein (protein)

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6RPO \| pdb_00006rpo	Download File View File

bat circovirus without DNA VLP

Forwood, J.K., Luque, D., Mata, C.P., Das, S., Raidal, S.

To be published

Released	2020-11-25
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Bat circovirus
Macromolecule	bat circovirus capsid protein (protein)

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6Z8D \| pdb_00006z8d	Download File View File

Human Picobirnavirus CP VLP

Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.

(2020) J Virol 94:

Released	2020-09-23
Method	ELECTRON MICROSCOPY 2.63 Å
Organisms	Human picobirnavirus
Macromolecule	Capsid protein precursor (protein)

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6Z8E \| pdb_00006z8e	Download File View File

Human Picobirnavirus Ht-CP VLP

Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.

(2020) J Virol 94:

Released	2020-09-23
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Human picobirnavirus
Macromolecule	Capsid protein precursor (protein)

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6Z8F \| pdb_00006z8f	Download File View File

Human Picobirnavirus D45-CP VLP

Ortega-Esteban, A., Mata, C.P., Rodriguez-Espinosa, M.J., Luque, D., Irigoyen, N., Rodriguez, J.M., de Pablo, P.J., Caston, J.R.

(2020) J Virol 94:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Human picobirnavirus strain Hy005102
Macromolecule	Capsid protein precursor (protein)

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7BCV \| pdb_00007bcv	Download File View File

Brevibacterium linens encapsulin structure

Allende-Ballestero, C., Luque, D., Klem, R., Cornelissen, J.J.L.M., Caston, J.R.

To be published

Released	2022-10-05
Method	ELECTRON MICROSCOPY 2.28 Å
Organisms	Brevibacterium linens
Macromolecule	Linocin-M18 (protein)

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7O7L \| pdb_00007o7l	Download File View File

(h-alpha2M)4 native I

Luque, D., Goulas, T., Mata, C.P., Mendes, S.R., Gomis-Ruth, F.X., Caston, J.R.

(2022) Proc Natl Acad Sci U S A 119: e2200102119-e2200102119

Released	2022-04-20
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7O7M \| pdb_00007o7m	Download File View File

(h-alpha2M)4 native II

Luque, D., Goulas, T., Mata, C.P., Mendes, S.R., Gomis-Ruth, F.X., Caston, J.R.

(2022) Proc Natl Acad Sci U S A 119: e2200102119-e2200102119

Released	2022-04-13
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7O7N \| pdb_00007o7n	Download File View File

(h-alpha2M)4 semiactivated I state

Luque, D., Goulas, T., Mata, C.P., Mendes, S.R., Gomis-Ruth, F.X., Caston, J.R.

(2022) Proc Natl Acad Sci U S A 119: e2200102119-e2200102119

Released	2022-04-13
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

1 to 25 of 37 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2XVR | pdb_00002xvr

3GF5 | pdb_00003gf5

3GNF | pdb_00003gnf

3IZG | pdb_00003izg

3J3I | pdb_00003j3i

3TN9 | pdb_00003tn9

3ZUE | pdb_00003zue

4UW7 | pdb_00004uw7

4UW8 | pdb_00004uw8

4ZIQ | pdb_00004ziq

4ZIU | pdb_00004ziu

4ZJG | pdb_00004zjg

4ZJH | pdb_00004zjh

5A42 | pdb_00005a42

5ND1 | pdb_00005nd1

6RPK | pdb_00006rpk

6RPL | pdb_00006rpl

6RPO | pdb_00006rpo

6Z8D | pdb_00006z8d

6Z8E | pdb_00006z8e

6Z8F | pdb_00006z8f

7BCV | pdb_00007bcv

7O7L | pdb_00007o7l

7O7M | pdb_00007o7m

7O7N | pdb_00007o7n