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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Liu, Y.L."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (11)
	Mus musculus (3)
	Bacteroides thetaiotaomicron (1)
	Bacteroides thetaiotaomicron VPI-5482 (1)
	Drosophila melanogaster (1)

Taxonomy

	Eukaryota (12)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)
	> 4.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (5)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	All beta proteins (2)
	Artifacts (2)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)

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1 to 14 of 14 Structures

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4JYO \| pdb_00004jyo	Download File View File

Structural basis for angiopoietin-1 mediated signaling initiation

Yu, X., Seegar, T.C.M., Dalton, A.C., Tzvetkova-Robev, D., Goldgur, Y., Nikolov, D.B., Barton, W.A.

(2013) Proc Natl Acad Sci U S A 110: 7205-7210

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Angiopoietin-1 (protein)
Unique Ligands	CA

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4JZC \| pdb_00004jzc	Download File View File

Angiopoietin-2 fibrinogen domain TAG mutant

Yu, X., Seegar, T.C.M., Dalton, A.C., Tzvetkova-Robev, D., Goldgur, Y., Nikolov, D.B., Barton, W.A.

(2013) Proc Natl Acad Sci U S A 110: 7205-7210

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Angiopoietin-2 (protein)

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4K0V \| pdb_00004k0v	Download File View File

Structural basis for angiopoietin-1 mediated signaling initiation

Yu, X., Seegar, T.C.M., Dalton, A.C., Tzvetkova-Robev, D., Goldgur, Y., Nikolov, D.B., Barton, W.A.

(2013) Proc Natl Acad Sci U S A 110: 7205-7210

Released	2013-05-08
Method	X-RAY DIFFRACTION 4.51 Å
Organisms	Homo sapiens
Macromolecule	Angiopoietin-1 (protein) TEK tyrosine kinase variant (protein)

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5TCX \| pdb_00005tcx	Download File View File

Crystal structure of human tetraspanin CD81

Zimmerman, B., McMillan, B.J., Seegar, T.C.M., Kruse, A.C., Blacklow, S.C.

(2016) Cell 167: 1041-1051.e11

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.955 Å
Organisms	Homo sapiens
Macromolecule	CD81 antigen (protein)
Unique Ligands	CLR

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5VO5 \| pdb_00005vo5	Download File View File

Crystal structure of Lgd-Shrub complex, single chain fusion

McMillan, B.J., Seegar, T.C.M., Blacklow, S.C.

(2017) Cell Rep 19: 1750-1757

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Drosophila melanogaster
Macromolecule	Coiled-coil and C2 domain-containing protein 1-like,GH13992p (protein)

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6BDZ \| pdb_00006bdz	Download File View File

ADAM10 Extracellular Domain Bound by the 11G2 Fab

Seegar, T.C.M.

(2017) Cell 171: 1638-1648.e7

Released	2017-12-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	11G2 Fab Heavy Chain (protein) 11G2 Fab Light Chain (protein) Disintegrin and metalloproteinase domain-containing protein 10 (protein)
Unique Ligands	CA, SO4, ZN
Unique branched monosaccharides	MAN, NAG

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6BE6 \| pdb_00006be6	Download File View File

ADAM10 Extracellular Domain

Seegar, T.C.M.

(2017) Cell 171: 1638-1648.e7

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Disintegrin and metalloproteinase domain-containing protein 10 (protein)
Unique Ligands	CA, SO4, ZN
Unique branched monosaccharides	MAN, NAG

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6PY8 \| pdb_00006py8	Download File View File

Crystal structure of the RBPJ-NOTCH1-NRARP ternary complex bound to DNA

Jarrett, S.M., Seegar, T.C.M., Blacklow, S.C.

(2019) Sci Signal 12:

Released	2019-08-14
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Homo sapiens
Macromolecule	Neurogenic locus notch homolog protein 1 (protein) Notch-regulated ankyrin repeat-containing protein (protein) Recombining binding protein suppressor of hairless (protein) DNA (nucleic acid)

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6U9S \| pdb_00006u9s	Download File View File

Crystal structure of human CD81 large extracellular loop in complex with 5A6 Fab

Susa, K.J., Seegar, T.C.M., Blacklow, S.C.B., Kruse, A.C.

(2020) Elife 9:

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	5A6 FAB Heavy Chain (protein) 5A6 FAB Light Chain (protein) CD81 antigen (protein)
Unique Ligands	GOL

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6UFY \| pdb_00006ufy	Download File View File

B. theta Bile Salt Hydrolase

Seegar, T.C.M.

(2020) Nat Chem Biol 16: 318-326

Released	2020-02-19
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Choloylglycine hydrolase (protein)

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6UH4 \| pdb_00006uh4	Download File View File

B. theta Bile Salt Hydrolase with covalent inhibitor

Seegar, T.C.M.

(2020) Nat Chem Biol 16: 318-326

Released	2020-02-19
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	Choloylglycine hydrolase (protein)
Unique Ligands	QC7

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7RCT \| pdb_00007rct	Download File View File

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor RMC-4550

Seegar, T.C.M.

(2021) Biochemistry 60: 2593-2609

Released	2021-09-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein)
Unique Ligands	4Q4, CL

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7RD5 \| pdb_00007rd5	Download File View File

Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL) in complex with 1C12 Fab

Lipper, C.H., Gabriel, K.H., Seegar, T.C.M., Durr, K.L., Tomlinson, M.G., Blacklow, S.C.

(2022) Structure 30: 206-214.e4

Released	2021-11-03
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	1C12 Fab Heavy Chain (protein) 1C12 Fab Light Chain (protein) Tetraspanin-15 (protein)

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7RDB \| pdb_00007rdb	Download File View File

Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL)

Lipper, C.H., Gabriel, K.H., Seegar, T.C.M., Durr, K.L., Tomlinson, M.G., Blacklow, S.C.

(2022) Structure 30: 206-214.e4

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	Tetraspanin-15 (protein)

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4JYO | pdb_00004jyo

Structural basis for angiopoietin-1 mediated signaling initiation

4JZC | pdb_00004jzc

Angiopoietin-2 fibrinogen domain TAG mutant

4K0V | pdb_00004k0v

Structural basis for angiopoietin-1 mediated signaling initiation

5TCX | pdb_00005tcx

Crystal structure of human tetraspanin CD81

5VO5 | pdb_00005vo5

Crystal structure of Lgd-Shrub complex, single chain fusion

6BDZ | pdb_00006bdz

ADAM10 Extracellular Domain Bound by the 11G2 Fab

6BE6 | pdb_00006be6

ADAM10 Extracellular Domain

6PY8 | pdb_00006py8

Crystal structure of the RBPJ-NOTCH1-NRARP ternary complex bound to DNA

6U9S | pdb_00006u9s

Crystal structure of human CD81 large extracellular loop in complex with 5A6 Fab

6UFY | pdb_00006ufy

B. theta Bile Salt Hydrolase

6UH4 | pdb_00006uh4

B. theta Bile Salt Hydrolase with covalent inhibitor

7RCT | pdb_00007rct

Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor RMC-4550

7RD5 | pdb_00007rd5

Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL) in complex with 1C12 Fab

7RDB | pdb_00007rdb

Crystal structure of Tspan15 large extracellular loop (Tspan15 LEL)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4JYO | pdb_00004jyo

4JZC | pdb_00004jzc

4K0V | pdb_00004k0v

5TCX | pdb_00005tcx

5VO5 | pdb_00005vo5

6BDZ | pdb_00006bdz

6BE6 | pdb_00006be6

6PY8 | pdb_00006py8

6U9S | pdb_00006u9s

6UFY | pdb_00006ufy

6UH4 | pdb_00006uh4

7RCT | pdb_00007rct

7RD5 | pdb_00007rd5

7RDB | pdb_00007rdb