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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kovalevsky, A."

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (53)
	Homo sapiens (32)
	Mus musculus (14)
	Trichoderma reesei (7)
	Thermus thermophilus HB8 (6)
	Human immunodeficiency virus 1 (5)
	Sus scrofa (4)
	Cryphonectria parasitica (3)
	Echinophyllia sp. SC22 (3)
	Oryctolagus cuniculus (3)

More...

Taxonomy

	Riboviria (58)
	Eukaryota (53)
	Bacteria (8)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (119)
	NEUTRON DIFFRACTION (23)

Polymer Entity Type

	Protein (118)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (50)
	2.0 - 2.5 (62)
	2.5 - 3.0 (9)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (15)
	2015 - 2019 (29)
	2020 - 2024 (71)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (69)
	Transferases (28)
	Lyases (4)

Symmetry Type

	Cyclic (75)
	Asymmetric (42)
	Dihedral (1)

SCOP Classification

	All beta proteins (30)
	Alpha and beta proteins (a/b) (14)
	Alpha and beta proteins (a+b) (3)
	Artifacts (4)

AllSelected

1 to 25 of 120 Structures

Page 1 of 5

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2JJI \| pdb_00002jji	Download File View File

Endothiapepsin in complex with a gem-diol inhibitor.

Coates, L., Tuan, H.-F., Tomanicek, S.J., Kovalevsky, A., Mustyakimov, M., Erskine, P., Cooper, J.

(2008) J Am Chem Soc 130: 7235

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QS, SO4

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2JJJ \| pdb_00002jjj	Download File View File

Endothiapepsin in complex with a gem-diol inhibitor.

Coates, L., Tuan, H.-F., Tomanicek, S.J., Kovalevsky, A., Mustyakimov, M., Erskine, P., Cooper, J.

(2008) J Am Chem Soc 130: 7235

Released	2008-05-27
Method	X-RAY DIFFRACTION 1 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QS, SO4

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2VS2 \| pdb_00002vs2	Download File View File

Neutron diffraction structure of endothiapepsin in complex with a gem- diol inhibitor.

Coates, L., Tuan, H.-F., Tomanicek, S., Kovalevsky, A., Mustyakimov, M., Erskine, P., Cooper, J.

(2008) J Am Chem Soc 130: 7235

Released	2008-05-27
Method	NEUTRON DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein)
Unique Ligands	0QS

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4HK8 \| pdb_00004hk8	Download File View File

Crystal Structures of Mutant Endo- -1,4-xylanase II Complexed with substrate (1.15 A) and Products (1.6 A)

Langan, P., Wan, Q., Coates, L., Kovalevsky, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 11-23

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.151 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	CIT, GOL
Unique branched monosaccharides	XYP

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4HK9 \| pdb_00004hk9	Download File View File

Crystal Structures of Mutant Endo-beta-1,4-xylanase II Complexed with substrate (1.15 A) and Products (1.6 A)

Langan, P., Wan, Q., Coates, L., Kovalevsky, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 11-23

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique branched monosaccharides	XYP

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4HKL \| pdb_00004hkl	Download File View File

Crystal Structures of Mutant Endo-beta-1,4-xylanase II Complexed with substrate (1.15 A) and Products (1.6 A)

Langan, P., Wan, Q., Coates, L., Kovalevsky, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 11-23

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	IOD

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4HKO \| pdb_00004hko	Download File View File

Crystal Structures of Mutant Endo-beta-1,4-xylanase II (E177Q) in the apo form

Langan, P., Wan, Q., Coates, L., Kovalevsky, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 11-23

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	IOD

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4IAC \| pdb_00004iac	Download File View File

X-RAY structure of cAMP dependent protein kinase A in complex with HIGH MG2+ concentration, AMP-PCP AND pseudo-substrate peptide SP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Peptide SP20 (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	ACP, MG

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4IAD \| pdb_00004iad	Download File View File

Low temperature X-ray Structure OF cAMP dependent protein kinase A in complex with high Mg2+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Phosphorylated peptide pSP20 (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	ADP, MG

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4IAF \| pdb_00004iaf	Download File View File

Room temperature X-ray Structure OF cAMP dependent protein kinase A in complex with high Mg2+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, MG

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4IAI \| pdb_00004iai	Download File View File

X-ray Structure of cAMP dependent protein kinase A in complex with high Ca2+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, CA, CO3, PEG

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4IAK \| pdb_00004iak	Download File View File

Low temperature X-ray structure of cAMP dependent protein kinase A in complex with high Sr2+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, CO3, SR

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4IAY \| pdb_00004iay	Download File View File

Room temperature X-ray Structure of cAMP dependent protein kinase A in complex with high Sr2+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, SR

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4IAZ \| pdb_00004iaz	Download File View File

Structure of cAMP dependent protein kinase A in complex with high Ba2+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2013) Biochemistry 52: 3721-3727

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, BA

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4IB0 \| pdb_00004ib0	Download File View File

X-ray Structure of cAMP dependent protein kinase A in complex with high Na+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2014) Biochemistry 53: 3179-3186

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, NA

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4IB1 \| pdb_00004ib1	Download File View File

Structure of cAMP dependent protein kinase A in complex with high K+ concentration, ADP and phosphorylated peptide pSP20

Gerlits, O., Kovalevsky, A.

(2014) Biochemistry 53: 3179-3186

Released	2013-12-11
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP, K

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4IB3 \| pdb_00004ib3	Download File View File

Structure of cAMP dependent protein kinase A in complex with ADP, phosphorylated peptide pSP20, and no metal

Gerlits, O., Kovalevsky, A.

(2014) Biochemistry 53: 3179-3186

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) phosphorylated pseudo-substrate peptide pSP20 (protein)
Unique Ligands	ADP

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4QXK \| pdb_00004qxk	Download File View File

Joint X-ray/neutron structure of PKGIbeta in complex with cGMP

Kim, C., Gerlits, O., Kovalevsky, A., Huang, G.Y.

(2014) Biochemistry 53: 6725-6727

Released	2014-11-12
Method	X-RAY DIFFRACTION NEUTRON DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	cGMP-dependent protein kinase 1 (protein)
Unique Ligands	NA, PCG

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4S2F \| pdb_00004s2f	Download File View File

Joint X-ray/neutron structure of Trichoderma reesei xylanase II at pH 4.4

Kovalevsky, A., Wan, Q., Langan, P.

(2015) Proc Natl Acad Sci U S A 112: 12384-12389

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.7 Å NEUTRON DIFFRACTION 2 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	IOD

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4S2G \| pdb_00004s2g	Download File View File

Joint X-ray/neutron structure of Trichoderma reesei xylanase II at pH 5.8

Kovalevsky, A., Wan, Q., Langan, P.

(2015) Proc Natl Acad Sci U S A 112: 12384-12389

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.6 Å NEUTRON DIFFRACTION 2 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	IOD

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4S2H \| pdb_00004s2h	Download File View File

Joint X-ray/neutron structure of Trichoderma reesei xylanase II at pH 8.5

Kovalevsky, A., Wan, Q., Langan, P.

(2015) Proc Natl Acad Sci U S A 112: 12384-12389

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.6 Å NEUTRON DIFFRACTION 1.7 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	IOD

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4XW4 \| pdb_00004xw4	Download File View File

X-ray structure of PKAc with AMPPNP, SP20, calcium ions

Gerlits, O., Tian, J., Das, A., Taylor, S., Langan, P., Heller, T.W., Kovalevsky, A.

(2015) J Biological Chem 290: 15538-15548

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Mus musculus Oryctolagus cuniculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	ANP, CA

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4XW5 \| pdb_00004xw5	Download File View File

X-ray structure of PKAc with ATP, CP20, calcium ions

Gerlits, O., Tian, J., Das, A., Taylor, S., Langan, P., Heller, T.W., Kovalevsky, A.

(2015) J Biological Chem 290: 15538-15548

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus Oryctolagus cuniculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	ATP, CA

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4XW6 \| pdb_00004xw6	Download File View File

X-ray structure of PKAc with ADP, free phosphate ion, CP20, magnesium ions

Gerlits, O., Tian, J., Das, A., Taylor, S., Langan, P., Heller, T.W., Kovalevsky, A.

(2015) J Biological Chem 290: 15538-15548

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Oryctolagus cuniculus
Macromolecule	cAMP-dependent protein kinase catalytic subunit alpha (protein) cAMP-dependent protein kinase inhibitor alpha (protein)
Unique Ligands	ADP, MG, PO4