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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Joseph, S."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (5)
	Thermus thermophilus HB8 (3)
	synthetic construct (3)
	Mus musculus (1)

Taxonomy

	Eukaryota (6)
	Bacteria (3)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (6)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (9)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (1)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (2)
	Hydrolases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	All alpha proteins (5)
	Low resolution protein structures (2)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (3)
	Peptides (3)
	Small proteins (3)
	Artifacts (2)

AllSelected

1 to 10 of 10 Structures

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2GV3 \| pdb_00002gv3	Download File View File

Translocation of a tRNA with an extended anticodon through the ribosome

Phelps, S.S., Gaudin, C., Yoshizawa, S., Benitez, C., Fourmy, D., Joseph, S.

(2006) J Mol Biology 360: 610-622

Released	2006-08-08
Method	SOLUTION NMR
Macromolecule	5'-R(GPGPCPCPAPGPAPCPUPCPCPCPGPAPAPUPCPUPGPGPCPC)-3' (nucleic acid)

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2MBV \| pdb_00002mbv	Download File View File

LMO4-LIM2 in complex with DEAF1 (404-418)

Joseph, S., Matthews, J.M., Kwan, A.H.-Y., Mackay, J.P., Cubeddu, L., Foo, P.

To be published

Released	2014-08-20
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Fusion protein of LIM domain transcription factor LMO4 (77-147) and DEAF1 (404-418) (protein)
Unique Ligands	ZN

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2UXB \| pdb_00002uxb	Download File View File

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V.

(2007) RNA 13: 817-823

Released	2007-07-31
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	K, MG, PAR, ZN

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2UXC \| pdb_00002uxc	Download File View File

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V.

(2007) RNA 13: 817

Released	2007-05-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	K, MG, PAR, ZN

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2UXD \| pdb_00002uxd	Download File View File

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V.

(2007) RNA 13: 817

Released	2007-10-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	K, MG, PAR, ZN

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6U0D \| pdb_00006u0d	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZL0590

Leonard, P.G., Joseph, S.

(2022) J Med Chem

Released	2020-08-19
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	DMS, POJ

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6UWU \| pdb_00006uwu	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZL0516

Leonard, P.G., Joseph, S.

(2020) J Med Chem 63: 5242-5256

Released	2020-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	EDO, QKP

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6WU8 \| pdb_00006wu8	Download File View File

Structure of human SHP2 in complex with inhibitor IACS-13909

Leonard, P.G., Joseph, S., Rodenberger, A.

(2020) Cancer Res 80: 4840-4853

Released	2021-03-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein)
Unique Ligands	U9Y

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7UI6 \| pdb_00007ui6	Download File View File

CryoEM structure of LARGE1 from C1 reconstruction

Joseph, S., Schnicker, N.J., Campbell, K.P.

To be published

Released	2023-03-08
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens
Macromolecule	Xylosyl- and glucuronyltransferase LARGE1 (protein)
Unique Ligands	MN

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7UI7 \| pdb_00007ui7	Download File View File

CryoEM structure of LARGE1 from C2 reconstruction

Schnicker, N.J., Joseph, S., Campbell, K.P.

To be published

Released	2023-03-08
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Xylosyl- and glucuronyltransferase LARGE1 (protein)
Unique Ligands	MN

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2GV3 | pdb_00002gv3

Translocation of a tRNA with an extended anticodon through the ribosome

2MBV | pdb_00002mbv

LMO4-LIM2 in complex with DEAF1 (404-418)

2UXB | pdb_00002uxb

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

2UXC | pdb_00002uxc

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

2UXD | pdb_00002uxd

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

6U0D | pdb_00006u0d

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZL0590

6UWU | pdb_00006uwu

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor ZL0516

6WU8 | pdb_00006wu8

Structure of human SHP2 in complex with inhibitor IACS-13909

7UI6 | pdb_00007ui6

CryoEM structure of LARGE1 from C1 reconstruction

7UI7 | pdb_00007ui7

CryoEM structure of LARGE1 from C2 reconstruction

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2GV3 | pdb_00002gv3

2MBV | pdb_00002mbv

2UXB | pdb_00002uxb

2UXC | pdb_00002uxc

2UXD | pdb_00002uxd

6U0D | pdb_00006u0d

6UWU | pdb_00006uwu

6WU8 | pdb_00006wu8

7UI6 | pdb_00007ui6

7UI7 | pdb_00007ui7