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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ishikawa, I."

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Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Allochromatium tepidum (1)
	Pyrococcus horikoshii (1)
	Thermus thermophilus HB8 (1)

Taxonomy

	Bacteria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (3)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (3)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

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1IXK	Download File View File

Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii

Ishikawa, I., Sakai, N., Yao, M., Watanabe, N., Tamura, T., Tanaka, I.

(2004) Proteins 54: 814-816

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Methyltransferase (protein)

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2DKF	Download File View File

Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-beta-lactamase Superfamily

Ishikawa, I., Nakagawa, N., Kuramitsu, S., Yokoyama, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) J Biochem 140: 535-542

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	metallo-beta-lactamase superfamily protein (protein)
Unique Ligands	ZN

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7VRJ	Download File View File

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum

Tani, K., Kobayashi, K., Hosogi, N., Ji, X.-C., Nagashima, S., Nagashima, K.V.P., Tsukatani, Y., Kanno, R., Hall, M., Yu, L.-J., Ishikawa, I., Okura, Y., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.

(2022) J Biol Chem 298: 101967-101967

Released	2022-05-04
Method	ELECTRON MICROSCOPY 2.81 Å
Organisms	Allochromatium tepidum
Macromolecule	Unique protein chains: 9
Unique Ligands	BCL, BPH, CA, CDL, CRT, DGA, FE, HEC, LDA, LMT, MG, MQ8, PGV, PLM, UQ8

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1IXK

Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii

2DKF

Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-beta-lactamase Superfamily

7VRJ

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum