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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 130 Structures.

Refinements

Structure Determination Methodology

experimental (130)

Scientific Name of Source Organism

	Homo sapiens (59)
	Mus musculus (21)
	Lama glama (9)
	Rattus norvegicus (9)
	Bos taurus (8)
	Severe acute respiratory syndrome coronavirus 2 (8)
	synthetic construct (8)
	Bombyx mori (7)
	Streptomyces rimofaciens (6)
	Mycobacterium tuberculosis H37Rv (5)

More...

Taxonomy

	Eukaryota (97)
	Bacteria (27)
	Riboviria (10)
	other sequences (8)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (3)
	Varidnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (97)
	ELECTRON MICROSCOPY (33)

Polymer Entity Type

	Protein (130)
	DNA (9)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (28)
	2.0 - 2.5 (39)
	2.5 - 3.0 (30)
	3.0 - 3.5 (19)
	3.5 - 4.0 (7)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (10)
	2005 - 2009 (23)
	2010 - 2014 (37)
	2015 - 2019 (13)
	2020 - 2024 (45)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (36)
	Transferases (10)
	Oxidoreductases (7)
	Isomerases (4)
	Lyases (3)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (21)
	mpstruc (21)
	OPM (16)
	MemProtMD (5)

Symmetry Type

	Asymmetric (93)
	Cyclic (35)
	Dihedral (7)
	Helical (1)

SCOP Classification

	All alpha proteins (20)
	Alpha and beta proteins (a/b) (14)
	Artifacts (7)
	All beta proteins (8)
	Small proteins (5)
	Alpha and beta proteins (a+b) (5)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 130 Structures

Page 1 of 6

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1HZP \| pdb_00001hzp	Download File View File

Crystal Structure of the Myobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase III

Scarsdale, J.N., Kazanina, G., He, X., Reynolds, K.A., Wright, H.T., TB Structural Genomics Consortium (TBSGC)

(2001) J Biological Chem 276: 20516-20522

Released	2001-06-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III (protein)
Unique Ligands	DAO, GOL

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1I1R \| pdb_00001i1r	Download File View File

CRYSTAL STRUCTURE OF A CYTOKINE/RECEPTOR COMPLEX

Chow, D., He, X., Snow, A.L., Rose-John, S., Garcia, K.C.

(2001) Science 291: 2150-2150

Released	2001-03-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human gammaherpesvirus 8
Macromolecule	INTERLEUKIN-6 RECEPTOR BETA CHAIN (protein) VIRAL IL-6 (protein)

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1K8D \| pdb_00001k8d	Download File View File

crystal structure of the non-classical MHC class Ib Qa-2 complexed with a self peptide

He, X., Tabaczewski, P., Ho, J., Stroynowski, I., Garcia, K.C.

(2001) Structure 9: 1213-1224

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	60S RIBOSOMAL PROTEIN (protein) BETA-2-MICROGLOBULIN (protein) QA-2 antigen (protein)

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1KZQ \| pdb_00001kzq	Download File View File

crystal structure of a parasite protein

He, X., Grigg, M.E., Boothroyd, J.C., Garcia, K.C.

(2002) Nat Struct Biol 9: 606-611

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Toxoplasma gondii
Macromolecule	Major Surface Antigen P30 (protein)

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1OXZ \| pdb_00001oxz	Download File View File

Crystal Structure of the Human GGA1 GAT domain

Zhu, G., Zhai, P., He, X., Terzyan, S., Zhang, R., Joachimiak, A., Tang, J., Zhang, X.C.

(2003) Biochemistry 42: 6392-6399

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1OZN \| pdb_00001ozn	Download File View File

1.5A Crystal Structure of the Nogo Receptor Ligand Binding Domain Reveals a Convergent Recognition Scaffold Mediating Inhibition of Myelination

He, X., Bazan, J.F., Park, J.B., McDermott, G., He, Z., Garcia, K.C.

(2003) Neuron 38: 177-185

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Reticulon 4 receptor (protein)
Unique Ligands	ACY
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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1Q32 \| pdb_00001q32	Download File View File

Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase

He, X., Babaoglu, K., Price, A., Nitiss, K.C., Nitiss, J.L., White, S.W.

(2007) J Mol Biology 372: 1070-1081

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	tyrosyl-DNA phosphodiesterase (protein)

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1R5W \| pdb_00001r5w	Download File View File

Evidence that structural rearrangements and/or flexibility during TCR binding can contribute to T-cell activation

Krogsgaard, M., Prado, N., Adams, E., He, X., Chow, D.C., Wilson, D.B., Garcia, K.C., Davis, M.M.

(2003) Mol Cell 12: 1367-1378

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	H-2 class II histocompatibility antigen, E-K alpha chain (protein) MHC H2-IE-beta (protein) artificial peptide (protein)

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1RKX \| pdb_00001rkx	Download File View File

Crystal Structure at 1.8 Angstrom of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis

Vogan, E.M., Bellamacina, C., He, X., Liu, H.W., Ringe, D., Petsko, G.A.

(2004) Biochemistry 43: 3057-3067

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Yersinia pseudotuberculosis
Macromolecule	CDP-glucose-4,6-dehydratase (protein)
Unique Ligands	NAD

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1S17 \| pdb_00001s17	Download File View File

Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors

Molteni, V., He, X., Nabakka, J., Yang, K., Kreusch, A., Gordon, P., Bursulaya, B., Ryder, N.S., Goldberg, R., He, Y.

(2004) Bioorg Med Chem Lett 14: 1477-1481

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Peptide deformylase (protein)
Unique Ligands	GNR, GOL, NI

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1YK0 \| pdb_00001yk0	Download File View File

structure of natriuretic peptide receptor-C complexed with atrial natriuretic peptide

He, X., Garcia, K.C.

(2006) J Mol Biology 361: 698-714

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Atrial natriuretic factor (protein) Atrial natriuretic peptide clearance receptor (protein)
Unique Ligands	CL, NAG
Unique branched monosaccharides	NAG

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1YK1 \| pdb_00001yk1	Download File View File

structure of natriuretic peptide receptor-C complexed with brain natriuretic peptide

He, X., Garcia, K.C.

(2006) J Mol Biology 361: 698-714

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Atrial natriuretic peptide clearance receptor (protein) Natriuretic peptides B (protein)
Unique Ligands	CL, NAG
Unique branched monosaccharides	NAG

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2ACV \| pdb_00002acv	Download File View File

Crystal Structure of Medicago truncatula UGT71G1

Shao, H., He, X., Achnine, L., Blount, J.W., Dixon, R.A., Wang, X.

(2005) Plant Cell 17: 3141-3154

Released	2005-11-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Medicago truncatula
Macromolecule	triterpene UDP-glucosyl transferase UGT71G1 (protein)
Unique Ligands	UDP

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2ACW \| pdb_00002acw	Download File View File

Crystal Structure of Medicago truncatula UGT71G1 complexed with UDP-glucose

Shao, H., He, X., Achnine, L., Blount, J.W., Dixon, R.A., Wang, X.

(2005) Plant Cell 17: 3141-3154

Released	2005-11-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Medicago truncatula
Macromolecule	triterpene UDP-glucosyl transferase UGT71G1 (protein)
Unique Ligands	UPG

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2GAS \| pdb_00002gas	Download File View File

Crystal Structure of Isoflavone Reductase

Wang, X., He, X., Lin, J., Shao, H., Chang, Z., Dixon, R.A.

(2006) J Mol Biology 358: 1341-1352

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Medicago sativa
Macromolecule	isoflavone reductase (protein)

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2GFP \| pdb_00002gfp	Download File View File

Structure of the Multidrug Transporter EmrD from Escherichia coli

Yin, Y., He, X., Szewczyk, P., Nguyen, T., Chang, G.

(2006) Science 312: 741-744

Released	2006-05-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Multidrug resistance protein D (protein)

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2IFG \| pdb_00002ifg	Download File View File

Structure of the extracellular segment of human TRKA in complex with nerve growth factor

He, X., Garcia, K.C.

(2007) Neuron 53: 25-38

Released	2007-02-13
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-nerve growth factor (protein) High affinity nerve growth factor receptor (protein)
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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2NSD \| pdb_00002nsd	Download File View File

Enoyl acyl carrier protein reductase InhA in complex with N-(4-methylbenzoyl)-4-benzylpiperidine

He, X., Alian, A., Ortiz de Montellano, P.R.

(2007) Bioorg Med Chem 15: 6649-6658

Released	2007-09-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Enoyl-[acyl-carrier-protein] reductase (protein)
Unique Ligands	4PI, NAD

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2O26 \| pdb_00002o26	Download File View File

Structure of a class III RTK signaling assembly

Liu, H., Chen, X., Focia, P.J., He, X.

(2007) EMBO J 26: 891-901

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Kit ligand (protein) Mast/stem cell growth factor receptor (protein)
Unique branched monosaccharides	FUL, MAN, NAG