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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Han, P."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (23)
	Homo sapiens (13)
	Mammalia (5)
	Odocoileus virginianus texanus (4)
	Equus caballus (3)
	Rhinolophus shameli (3)
	Hippopotamus amphibius (2)
	Influenza A virus (A/Indonesia/5/2005(H5N1)) (2)
	Odocoileus virginianus (2)
	Severe acute respiratory syndrome coronavirus (2)

More...

Taxonomy

	Eukaryota (33)
	Riboviria (30)
	other sequences (2)
	unclassified sequences (2)
	unclassified viruses (1)

Experimental Method

	X-RAY DIFFRACTION (22)
	ELECTRON MICROSCOPY (17)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (19)
	3.0 - 3.5 (14)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (1)
	2020 - 2024 (36)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (26)

Symmetry Type

	Asymmetric (34)
	Cyclic (5)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 39 Structures

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3VM7	Download File View File

Structure of an Alpha-Amylase from Malbranchea cinnamomea

Zhou, P., Hu, S.Q., Zhou, Y., Han, P., Yang, S.Q., Jiang, Z.Q.

(2013) Appl Biochem Biotechnol 170: 420-435

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Malbranchea cinnamomea
Macromolecule	Alpha-amylase (protein)
Unique Ligands	CA, GLC, NAG, TRS

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7W6R	Download File View File

Structure of Bat coronavirus RaTG13 spike receptor-binding domain complexed with its receptor equine ACE2

Xu, Z.P., Liu, K.F., Han, P., Qi, J.X.

(2022) Nat Commun 13: 3547

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bat coronavirus RaTG13 Equus caballus
Macromolecule	Angiotensin-converting enzyme (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN

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7W6U	Download File View File

Structure of SARS-CoV-2 spike receptor-binding domain complexed with its receptor equine ACE2

Xu, Z.P., Liu, K.F., Han, P., Qi, J.X.

(2022) Nat Commun 13: 3547

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Equus caballus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7WBP	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 Omicron variant spike glycoprotein in complex with its receptor human ACE2

Qi, J., Han, P.

(2022) Cell 185: 630-640.e10

Released	2022-01-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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7WBQ	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 Delta variant spike glycoprotein in complex with its receptor human ACE2

Qi, J., Han, P.

(2022) Cell 185: 630-640.e10

Released	2022-01-19
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	FUL, NAG

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7WNM	Download File View File

Structure of SARS-CoV-2 Gamma variant receptor-binding domain complexed with high affinity human ACE2 mutant (T27F,R273Q)

Ma, R.Y., Han, P.C., Wang, Q.H., Han, P.

(2022) Signal Transduct Target Ther 7: 10-10

Released	2022-12-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7WRH	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2

Han, P., Xie, Y., Qi, J.

(2022) Cell Discov 8: 65-65

Released	2023-02-01
Method	ELECTRON MICROSCOPY 2.66 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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7WRI	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron spike receptor-binding domain in complex with mouse ACE2

Han, P., Xie, Y., Qi, J.

(2022) Cell Discov 8: 65-65

Released	2022-06-08
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Mus musculus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN

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7WSE	Download File View File

Cryo-EM structure of SARS-CoV-2 spike receptor-binding domain complexed with its receptor minke whale ACE2

Li, S., Han, P.

(2022) Natl Sci Rev 9: nwac122-nwac122

Released	2022-10-19
Method	ELECTRON MICROSCOPY 2.93 Å
Organisms	Mammalia Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	ZN

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7WSF	Download File View File

Cryo-EM structure of SARS-CoV spike receptor-binding domain in complex with minke whale ACE2

Li, S., Han, P., Qi, J.

(2022) Natl Sci Rev 9: nwac122-nwac122

Released	2022-10-19
Method	ELECTRON MICROSCOPY 2.87 Å
Organisms	Mammalia Severe acute respiratory syndrome coronavirus
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	ZN

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7WSG	Download File View File

Cryo-EM structure of SARS-CoV spike receptor-binding domain in complex with sea lion ACE2

Li, S., Han, P., Qi, J.

(2022) Natl Sci Rev 9: nwac122-nwac122

Released	2022-11-09
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Mammalia Severe acute respiratory syndrome coronavirus
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	ZN

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7WSH	Download File View File

Cryo-EM structure of SARS-CoV-2 spike receptor-binding domain in complex with sea lion ACE2

Li, S., Han, P., Qi, J.

(2022) Natl Sci Rev 9: nwac122-nwac122

Released	2022-11-09
Method	ELECTRON MICROSCOPY 2.89 Å
Organisms	Mammalia Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7WSK	Download File View File

Crystal structure of SARS-CoV-2 Omicron spike receptor-binding domain in complex with civet ACE2

Huang, B., Han, P., Qi, J.

(2022) Cell Discov 8: 65-65

Released	2022-06-08
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Mammalia Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	MAN, NAG

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7XA7	Download File View File

Crystal structure of SARS-CoV-2 receptor-binding domain in complex with intermediate horseshoe bat ACE2

Tang, L.F., Zhang, D., Han, P., Qi, J.X.

(2022) Int J Biol Sci 18: 4658-4668

Released	2022-12-21
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Rhinolophus affinis Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7XAD	Download File View File

Crystal strucutre of PD-L1 and DBL2_02 designed protein binder

Liu, K.F., Xu, Z.P., Han, P., Pacesa, M., Gao, G.F., Chai, Y., Tan, S.G.

(2023) Nature 617: 176-184

Released	2023-04-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens chemical production metagenome
Macromolecule	DBL2_02 binder (protein) Programmed cell death 1 ligand 1 (protein)

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7XAE	Download File View File

Crystal strucutre of PD-L1 and 3ONJA protein

Liu, K.F., Xu, Z.P., Han, P., Gao, G.F., Chai, Y., Tan, S.G.

To be published

Released	2023-09-20
Method	X-RAY DIFFRACTION 3.44 Å
Organisms	Homo sapiens chemical production metagenome
Macromolecule	2IC6 (protein) Programmed cell death 1 ligand 1 (protein)

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7XBF	Download File View File

The complex structure of RshSTT182/200 RBD-insert2 bound to human ACE2

Hu, Y., Liu, K.F., Han, P., Qi, J.X.

(2023) EMBO J 42: e111737-e111737

Released	2023-01-11
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Homo sapiens Rhinolophus shameli
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) RshSTT182/200 coronavirus receptor binding domain insert2 (protein)
Unique Ligands	NAG, ZN

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7XBG	Download File View File

The crystal structure of RshSTT182/200 RBD-insert2-T346R-Y496G mutant in complex with human ACE2

Hu, Y., Liu, K.F., Han, P., Qi, J.X.

(2023) EMBO J 42: e111737-e111737

Released	2023-01-11
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Homo sapiens Rhinolophus shameli
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) RshSTT182/200 coronavirus receptor binding domain insert2 mutant (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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7XBH	Download File View File

The complex structure of RshSTT182/200 RBD bound to human ACE2

Hu, Y., Liu, K.F., Han, P., Qi, J.X.

(2023) EMBO J 42: e111737-e111737

Released	2023-01-11
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Homo sapiens Rhinolophus shameli
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) RshSTT182/200 coronavirus receptor binding domain (protein)
Unique Ligands	NAG, ZN

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7XBY	Download File View File

The crystal structure of SARS-CoV-2 Omicron BA.1 variant RBD in complex with equine ACE2

Xu, Z.P., Liu, K.F., Han, P., Qi, J.X.

(2022) Nat Commun 13: 3547-3547

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Equus caballus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	BR, NAG, ZN

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7XYQ	Download File View File

Crystal strucutre of PD-L1 and the computationally designed DBL1_03 protein binder

Liu, K., Xu, Z., Han, P., Pacesa, M., Gao, G.F., Chai, Y., Tan, S.

(2023) Nature 617: 176-184

Released	2023-04-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CD274 molecule (protein) DBL1_03 (protein)
Unique Ligands	ARG

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8HFX	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with white-tailed deer ACE2

Han, P., Meng, Y.M., Qi, J.X.

(2023) J Virol 97: e0050523-e0050523

Released	2023-08-30
Method	ELECTRON MICROSCOPY 2.98 Å
Organisms	Human immunodeficiency virus 1 Odocoileus virginianus texanus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike glycoprotein,Envelope glycoprotein (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	BMA, NAG

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8HFY	Download File View File

SARS-CoV-2 Omicron BA.1 spike protein receptor-binding domain in complex with white-tailed deer ACE2

Han, P., Meng, Y.M., Qi, J.X.

(2023) J Virol 97: e0050523-e0050523

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.21 Å
Organisms	Odocoileus virginianus texanus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	BMA, NAG

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8HFZ	Download File View File

Cryo-EM structure of SARS-CoV-2 prototype spike protein in complex with white-tailed deer ACE2

Han, P., Meng, Y.M., Qi, J.X.

(2023) J Virol 97: e0050523-e0050523

Released	2023-08-30
Method	ELECTRON MICROSCOPY 2.71 Å
Organisms	Odocoileus virginianus texanus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike glycoprotein (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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8HG0	Download File View File

Cryo-EM structure of SARS-CoV-2 prototype spike protein receptor-binding domain in complex with white-tailed deer ACE2

Han, P., Meng, Y.M., Qi, J.X.

(2023) J Virol 97: e0050523-e0050523

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.51 Å
Organisms	Odocoileus virginianus texanus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

1 to 25 of 39 Structures

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