RCSB PDB: Search

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Hafenstein, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Search Summary

This query matches 64 Structures.

AllSelected

Explore in 3D

1M06	Download File View File

Structural Studies of Bacteriophage alpha3 Assembly, X-Ray Crystallography

Bernal, R.A., Hafenstein, S., Olson, N.H., Bowman, V., Chipman, P.R., Baker, T.S., Fane, B.A., Rossmann, M.G.

(2003) J Mol Biol 325: 11-24

Released	2002-12-25
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia phage alpha3
Macromolecule	Capsid Protein (protein) Major spike protein (protein) Small core protein (protein) 5'-D(P(3DR)P(3DR)P(3DR)P(3DR)P(3DR)P(3DR)P(3DR)P(3DR)P(3DR)P(3DR))-3' (nucleic acid)

Explore in 3D

1M0F	Download File View File

Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy

Bernal, R.A., Hafenstein, S., Olson, N.H., Bowman, V.D., Chipman, P.R., Baker, T.S., Fane, B.A., Rossmann, M.G.

(2003) J Mol Biol 325: 11-24

Released	2002-12-25
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Escherichia phage alpha3
Macromolecule	Capsid Protein F (protein) Major Spike Protein G (protein) Scaffolding Protein B (protein) Scaffolding protein D (protein)

Explore in 3D

1RB8	Download File View File

The phiX174 DNA binding protein J in two different capsid environments.

Bernal, R.A., Hafenstein, S., Esmeralda, R., Fane, B.A., Rossmann, M.G.

(2004) J Mol Biol 337: 1109-1122

Released	2004-04-13
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia phage alpha3 Sinsheimervirus phiX174
Macromolecule	Capsid protein (protein) Major spike protein (protein) Small core protein (protein) DNA (5'-D(PCPAPAPA)-3') (nucleic acid)
Unique Ligands	DC

Explore in 3D

2NSU	Download File View File

Crystal structure of the ectodomain of human transferrin receptor fitted into a cryo-EM reconstruction of canine parvovirus and feline transferrin receptor complex

Hafenstein, S., Kostyuchenko, V.A., Rossmann, M.G.

(2007) Proc Natl Acad Sci U S A 104: 6585-6589

Released	2007-03-27
Method	ELECTRON MICROSCOPY 27 Å
Organisms	Homo sapiens
Macromolecule	Transferrin receptor protein 1 (protein)

Explore in 3D

2QZD	Download File View File

Fitted structure of SCR4 of DAF into cryoEM density

Hafenstein, S., Bowman, V.D., Chipman, P.R., Bator Kelly, C.M., Lin, F., Medof, M.E., Rossmann, M.G.

(2007) J Virol 81: 12927-12935

Released	2007-10-30
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Homo sapiens
Macromolecule	Complement decay-accelerating factor (protein)

Explore in 3D

2QZF	Download File View File

SCR1 of DAF from 1ojv fitted into cryoEM density

Hafenstein, S., Bowman, V.D., Chipman, P.R., Bator Kelly, C.M., Lin, F., Medof, M.E., Rossmann, M.G.

(2007) J Virol 81: 12927-12935

Released	2007-10-30
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Homo sapiens
Macromolecule	Complement decay-accelerating factor (protein)

Explore in 3D

2QZH	Download File View File

SCR2/3 of DAF from the NMR structure 1nwv fitted into a cryoEM reconstruction of CVB3-RD complexed with DAF

Hafenstein, S., Bowman, V.D., Chipman, P.R., Bator Kelly, C.M., Lin, F., Medof, M.E., Rossmann, M.G.

(2007) J Virol 81: 12927-12935

Released	2007-10-30
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Homo sapiens
Macromolecule	Complement decay-accelerating factor (protein)

Explore in 3D

2X5I	Download File View File

Crystal structure echovirus 7

Plevka, P., Hafenstein, S., Zhang, Y., Bowman, V.D., Chipman, P.R., Bator, C.M., Rossmann, M.G.

(2010) J Virol 84: 12665

Released	2010-12-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Echovirus E7
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)
Unique Ligands	DAO

Explore in 3D

2XGK	Download File View File

Virus like particle of L172W mutant of Minute Virus of Mice - the immunosuppressive strain

Plevka, P., Hafenstein, S., Tattersall, P., Cotmore, S., Farr, G., D'Abramo, A., Rossmann, M.G.

(2011) J Virol 85: 4822

Released	2011-04-20
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Murine minute virus (STRAIN MVMI)
Macromolecule	COAT PROTEIN VP2 (protein)

Explore in 3D

3EPC	Download File View File

CryoEM structure of poliovirus receptor bound to poliovirus type 1

Zhang, P., Mueller, S., Morais, M.C., Bator, C.M., Bowman, V.D., Hafenstein, S., Wimmer, E., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 18284-18289

Released	2008-11-11
Method	ELECTRON MICROSCOPY 8 Å
Organisms	Homo sapiens Human poliovirus 1 Mahoney
Macromolecule	Poliovirus receptor (protein) Protein VP1 (protein) Protein VP2 (protein) Protein VP3 (protein) Protein VP4 (protein)
Unique Ligands	MYR, SPH

Explore in 3D

3EPD	Download File View File

CryoEM structure of poliovirus receptor bound to poliovirus type 3

Zhang, P., Mueller, S., Morais, M.C., Bator, C.M., Bowman, V.D., Hafenstein, S., Wimmer, E., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 18284-18289

Released	2008-11-11
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Homo sapiens Poliovirus 3
Macromolecule	Unique protein chains: 6
Unique Ligands	MYR, SPH

Explore in 3D

3EPF	Download File View File

CryoEM structure of poliovirus receptor bound to poliovirus type 2

Zhang, P., Mueller, S., Morais, M.C., Bator, C.M., Bowman, V.D., Hafenstein, S., Wimmer, E., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 18284-18289

Released	2008-11-11
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Homo sapiens Poliovirus type 2 strain Lansing
Macromolecule	Poliovirus receptor (protein) Protein VP1 (protein) Protein VP2 (protein) Protein VP3 (protein) Protein VP4 (protein)
Unique Ligands	MYR, SC4

Explore in 3D

3GK8	Download File View File

X-ray crystal structure of the Fab from MAb 14, mouse antibody against Canine Parvovirus

Hafenstein, S., Bowman, V., Sun, T., Nelson, C., Palermo, L., Chipman, P., Battisti, A., Parrish, C.

(2009) J Virol 83: 5556-5566

Released	2009-06-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Fab 14 Heavy Chain (protein) Fab 14 Light Chain (protein)

Explore in 3D

3IY0	Download File View File

Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 12.5 Å
Organisms	Mus musculus
Macromolecule	Fab 14, heavy domain (protein) Fab 14, light domain (protein)

Explore in 3D

3IY1	Download File View File

Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Rattus norvegicus
Macromolecule	Fab B, heavy chain (protein) Fab B, light chain (protein)

Explore in 3D

3IY2	Download File View File

Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Mus musculus
Macromolecule	Antibody 6, heavy chain (protein) Antibody 6, light chain (protein)

Explore in 3D

3IY3	Download File View File

Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 11.1 Å
Organisms	Mus musculus
Macromolecule	antibody fragment from neutralizing antibody 8 (heavy chain) (protein) antibody fragment from neutralizing antibody 8 (light chain) (protein)

Explore in 3D

3IY4	Download File View File

Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 11.7 Å
Organisms	Mus musculus
Macromolecule	fragment of neutralizing antibody 15 (heavy chain) (protein) fragment of neutralizing antibody 15 (light chain) (protein)

Explore in 3D

3IY5	Download File View File

Variable domains of the mouse Fab (1AIF) fitted into the cryoEM reconstruction of the virus-Fab 16 complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 18 Å
Organisms	Mus musculus
Macromolecule	antibody fragment IGG2A (heavy chain) (protein) antibody fragment IGG2A (light chain) (protein)

Explore in 3D

3IY6	Download File View File

Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Rattus norvegicus
Macromolecule	fragment from neutralizing antibody E (heavy chain) (protein) fragment from neutralizing antibody E (light chain) (protein)

Explore in 3D

3IY7	Download File View File

Variable domains of the computer generated model (WAM) of Fab F fitted into the cryoEM reconstruction of the virus-Fab F complex

Hafenstein, S., Bowman, V.D., Sun, T., Nelson, C.D., Palermo, L.M., Chipman, P.R., Battisti, A.J., Parrish, C.R., Rossmann, M.G.

(2009) J Virol 83: 5556-5566

Released	2009-05-12
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Rattus norvegicus
Macromolecule	fragment from neutralizing antibody F (heavy chain) (protein) fragment from neutralizing antibody F (light chain) (protein)

Explore in 3D

3IYP	Download File View File

The Interaction of Decay-accelerating Factor with Echovirus 7

Plevka, P., Hafenstein, S., Zhang, Y., Harris, K.G., Cifuente, J.O., Bowman, V.D., Chipman, P.R., Lin, F., Medof, D.E., Bator, C.M., Rossmann, M.G.

(2010) J Virol 84: 12665-12674

Released	2010-11-24
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Echovirus E7 Homo sapiens
Macromolecule	Capsid protein (protein) Complement decay-accelerating factor (protein) Polyprotein (protein)
Unique Ligands	DAO

Explore in 3D

3J3Z	Download File View File

Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment

Lee, H., Cifuente, J.O., Ashley, R.E., Conway, J.F., Makhov, A.M., Tano, Y., Shimizu, H., Nishimura, Y., Hafenstein, S.

(2013) J Virol 87: 11363-11370

Released	2013-08-28
Method	ELECTRON MICROSCOPY 23.4 Å
Organisms	Mus musculus
Macromolecule	MA28-7 neutralizing antibody heavy chain (protein) MA28-7 neutralizing antibody light chain (protein)