RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Gupta, Y.K."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (5)
	Severe acute respiratory syndrome coronavirus 2 (4)
	Escherichia coli (1)
	Methylophilus methylotrophus (1)

Taxonomy

	Eukaryota (5)
	Riboviria (4)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (9)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (11)
	DNA (3)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (2)
	2015 - 2019 (3)
	2020 - 2024 (3)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)

SCOP Classification

	All alpha proteins (4)
	Alpha and beta proteins (a/b) (2)
	Small proteins (2)

AllSelected

1 to 11 of 11 Structures

Page 1 of 1

Sort by

Explore in 3D

1RJV	Download File View File

Solution Structure of Human alpha-Parvalbumin refined with a paramagnetism-based strategy

Baig, I., Bertini, I., Del Bianco, C., Gupta, Y.K., Lee, Y.M., Luchinat, C., Quattrone, A., Structural Proteomics in Europe (SPINE)

(2004) Biochemistry 43: 5562-5573

Released	2004-05-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Parvalbumin alpha (protein)
Unique Ligands	CA

Explore in 3D

1RK9	Download File View File

Solution Structure of Human alpha-Parvalbumin (Minimized Average Structure)

Baig, I., Bertini, I., Del Bianco, C., Gupta, Y.K., Lee, Y.-M., Luchinat, C., Quattrone, A., Structural Proteomics in Europe (SPINE)

(2004) Biochemistry 43: 5562-5573

Released	2004-06-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Parvalbumin alpha (protein)
Unique Ligands	CA

Explore in 3D

3BSB	Download File View File

Crystal Structure of Human Pumilio1 in Complex with CyclinB reverse RNA

Gupta, Y.K., Nair, D.T., Wharton, R.P., Aggarwal, A.K.

(2008) Structure 16: 549-557

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Pumilio homolog 1 (protein) 5'-R(UPUPUPAPAPUPGPUP*U)-3' (nucleic acid)

Explore in 3D

3BSX	Download File View File

Crystal Structure of Human Pumilio 1 in complex with Puf5 RNA

Gupta, Y.K., Nair, D.T., Wharton, R.P., Aggarwal, A.K.

(2008) Structure 16: 549-557

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Homo sapiens
Macromolecule	Pumilio homolog 1 (protein) 5'-R(UPUPGPUPAPAPUPAPUPUP*A)-3' (nucleic acid)

Explore in 3D

4ZCF	Download File View File

Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I

Gupta, Y.K., Chan, S.H., Xu, S.Y., Aggarwal, A.K.

(2015) Nat Commun 6: 7363-7363

Released	2015-07-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Restriction endonuclease EcoP15I, modification subunit (protein) Restriction endonuclease EcoP15I, restriction subunit (protein) DNA 20-mer AATCATAGTCTACTGCTGTA (nucleic acid) DNA 20-mer ATACAGCAGTAGACTATGAT (nucleic acid)
Unique Ligands	AMP, CA, MN

Explore in 3D

5HR4	Download File View File

Structure of Type IIL restriction-modification enzyme MmeI in complex with DNA has implications for engineering of new specificities

Callahan, S.J., Luyten, Y.A., Gupta, Y.K., Wilson, G.G., Roberts, R.J., Morgan, R.D., Aggarwal, A.K.

(2016) PLoS Biol 14: e1002442-e1002442

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.5964 Å
Organisms	Methylophilus methylotrophus
Macromolecule	MmeI (protein) DNA (5'-D(PGPTPTPAPTPGPTPCPGPGPAPTPA)-3') (nucleic acid) DNA (5'-D(PTPAPTPCPCPGPAPCPAPTPAPAPC)-3') (nucleic acid)
Unique Ligands	CA, SFG

Explore in 3D

5L2X	Download File View File

Crystal structure of human PrimPol ternary complex

Rechkoblit, O., Gupta, Y.K., Malik, R., Rajashankar, K.R., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.

(2016) Sci Adv 2: e1601317-e1601317

Released	2016-11-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed primase/polymerase protein (protein) DNA (5'-D(PGPGPTPAPGPCP(DDG))-3') (nucleic acid) DNA (5'-D(PTPCPGPCP(5IU)PAPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DTP

Explore in 3D

6WKS	Download File View File

Structure of SARS-CoV-2 nsp16/nsp10 in complex with RNA cap analogue (m7GpppA) and S-adenosylmethionine

Gupta, Y.K., Viswanathan, T., Arya, S., Qi, S., Misra, A., Chan, S.-H.

(2020) Nat Commun 11: 3718-3718

Released	2020-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	ADN, EDO, GTA, SAM, ZN

Explore in 3D

7LW3	Download File View File

Structure of SARS-CoV-2 nsp16/nsp10 complex in presence of Cap-1 analog (m7GpppAmU) and SAH

Gupta, Y.K., Viswanathan, T., Misra, A., Qi, S.

(2021) Nat Commun 12: 3287-3287

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	EDO, MES, MG, SAH, YG4, ZN

Explore in 3D

7LW4	Download File View File

Structure of SARS-CoV-2 nsp16/nsp10 complex in presence of S-adenosyl-L-homocysteine (SAH)

Gupta, Y.K., Viswanathan, T., Misra, A., Qi, S.

(2021) Nat Commun 12: 3287-3287

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein)
Unique Ligands	ACT, EDO, MES, SAH, ZN

Explore in 3D

8VUO	Download File View File

Crystal structure of SARS-CoV-2 nsp16/nsp10 in complex with Cap-1 RNA

Misra, A., Rahisuddin, R., Gupta, Y.K.

To be published

Released	2025-02-05
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase (protein) Non-structural protein 10 (protein) RNA (5'-R(APUPUPAPAPAPGPGPUPU)-3') (nucleic acid)
Unique Ligands	EDO, M7G, MG, SAH, ZN

1 to 11 of 11 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification