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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gu, Y."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	Homo sapiens (25)
	Mus musculus (13)
	human papillomavirus 58 (5)
	Enterobacter cloacae (4)
	Escherichia coli (4)
	Mycobacterium tuberculosis (4)
	Pseudomonas aeruginosa PA14 (4)
	Bacillus cereus B4264 (3)
	Escherichia phage vB_EcoM_Goslar (3)
	Human papillomavirus type 6 (3)

More...

Taxonomy

	Eukaryota (39)
	Bacteria (24)
	Monodnaviria (12)
	Duplodnaviria (8)
	Riboviria (6)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (50)
	ELECTRON MICROSCOPY (28)

Polymer Entity Type

	Protein (78)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (14)
	2.0 - 2.5 (15)
	2.5 - 3.0 (24)
	3.0 - 3.5 (9)
	3.5 - 4.0 (7)
	4.0 - 4.5 (6)
	> 4.5 (2)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (19)
	2010 - 2014 (2)
	2015 - 2019 (12)
	2020 - 2024 (35)

Enzyme Classification Name

	Transferases (31)
	Hydrolases (2)
	Isomerases (2)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (6)
	OPM (5)
	MemProtMD (3)

Symmetry Type

	Asymmetric (47)
	Cyclic (23)
	Dihedral (3)
	Helical (3)
	Octahedral (2)
	Icosahedral (1)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a+b) (18)
	Alpha and beta proteins (a/b) (12)
	Artifacts (15)
	All alpha proteins (5)

AllSelected

1 to 25 of 78 Structures

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1F3A	Download File View File

CRYSTAL STRUCTURE OF MGSTA1-1 IN COMPLEX WITH GSH

Gu, Y., Singh, S.V., Ji, X.

(2000) Biochemistry 39: 12552-12557

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	GLUTATHIONE S-TRANSFERASE YA CHAIN (protein)
Unique Ligands	GSH

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1F3B	Download File View File

CRYSTAL STRUCTURE OF MGSTA1-1 IN COMPLEX WITH GLUTATHIONE CONJUGATE OF BENZO[A]PYRENE EPOXIDE

Gu, Y., Singh, S.V., Ji, X.

(2000) Biochemistry 39: 12552-12557

Released	2000-10-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	GLUTATHIONE S-TRANSFERASE YA CHAIN (protein)
Unique Ligands	GBX

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1L4U	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION

Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S., Ji, X.

(2002) J Mol Biol 319: 779-789

Released	2002-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	ADP, CL, EPE, MG, PT

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1L4Y	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION

Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S., Ji, X.

(2002) J Mol Biol 319: 779-789

Released	2002-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	ADP, CL, MG

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1ML6	Download File View File

Crystal Structure of mGSTA2-2 in Complex with the Glutathione Conjugate of Benzo[a]pyrene-7(R),8(S)-Diol-9(S),10(R)-Epoxide

Gu, Y., Xiao, B., Wargo, H.L., Bucher, M.H., Singh, S.V., Ji, X.

(2003) Biochemistry 42: 917-921

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Glutathione S-Transferase GT41A (protein)
Unique Ligands	GBX, IPA

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1MRV	Download File View File

crystal structure of an inactive Akt2 kinase domain

Huang, X., Begley, M., Morgenstern, K.A., Gu, Y., Rose, P., Zhao, H., Zhu, X.

(2003) Structure 11: 21-30

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	RAC-beta serine/threonine kinase (protein)

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1MRY	Download File View File

crystal structure of an inactive akt2 kinase domain

Huang, X., Begley, M., Morgenstern, K.A., Gu, Y., Rose, P., Zhao, H., Zhu, X.

(2003) Structure 11: 21-30

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	RAC-beta serine/threonine kinase (protein)

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1NM8	Download File View File

Structure of Human Carnitine Acetyltransferase: Molecular Basis for Fatty Acyl Transfer

Wu, D., Govindasamy, L., Lian, W., Gu, Y., Kukar, T., Agbandje-McKenna, M., McKenna, R.

(2003) J Biol Chem 278: 13159-13165

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Carnitine O-acetyltransferase (protein)

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1RHH	Download File View File

Crystal Structure of the Broadly HIV-1 Neutralizing Fab X5 at 1.90 Angstrom Resolution

Darbha, R., Phogat, S., Labrijn, A.F., Shu, Y., Gu, Y., Andrykovitch, M., Zhang, M.Y., Pantophlet, R., Martin, L., Vita, C., Burton, D.R., Dimitrov, D.S., Ji, X.

(2004) Biochemistry 43: 1410-1417

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Fab X5, heavy chain (protein) Fab X5, light chain (protein)

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1S5O	Download File View File

Structural and Mutational Characterization of L-carnitine Binding to Human carnitine Acetyltransferase

Govindasamy, L., Kukar, T., Lian, W., Pedersen, B., Gu, Y., Agbandje-Mckenna, M., Jin, S., Mckenna, R., Wu, D.

(2004) J Struct Biol 146: 416-424

Released	2004-02-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	carnitine acetyltransferase isoform 2 (protein)
Unique Ligands	152

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1T1U	Download File View File

Structural Insights and Functional Implications of Choline Acetyltransferase

Govindasamy, L., Pedersen, B., Lian, W., Kukar, T., Gu, Y., Jin, S., Agbandje-McKenna, M., Wu, D.

(2004) J Struct Biol 148: 226-235

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Rattus norvegicus
Macromolecule	Choline O-acetyltransferase (protein)

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1TDI	Download File View File

Crystal Structure of hGSTA3-3 in Complex with Glutathione

Gu, Y., Guo, J., Pal, A., Pan, S.S., Zimniak, P., Singh, S.V., Ji, X.

(2004) Biochemistry 43: 15673-15679

Released	2005-01-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Glutathione S-transferase A3-3 (protein)
Unique Ligands	GSH

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1YY7	Download File View File

Crystal structure of stringent starvation protein A (SspA), an RNA polymerase-associated transcription factor

Hansen, A.-M., Gu, Y., Li, M., Andrykovitch, M., Waugh, D.S., Jin, D.J., Ji, X.

(2005) J Biol Chem 280: 17380-17391

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Yersinia pestis
Macromolecule	stringent starvation protein A (protein)
Unique Ligands	CIT

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2G1J	Download File View File

Crystal structure of Mycobacterium tuberculosis Shikimate Kinase at 2.0 angstrom resolution

Gan, J., Gu, Y., Li, Y., Yan, H., Ji, X.

(2006) Biochemistry 45: 8539-8545

Released	2006-07-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Shikimate kinase (protein)
Unique Ligands	SO4

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2G1K	Download File View File

Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimate at 1.75 angstrom resolution

Gan, J., Gu, Y., Li, Y., Yan, H., Ji, X.

(2006) Biochemistry 45: 8539-8545

Released	2006-07-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Shikimate kinase (protein)
Unique Ligands	CL, SKM, SO4

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2P2H	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a pyridinyl-triazine inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2007) J Med Chem 50: 611-626

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	994

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2P2I	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a nicotinamide inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2007) J Med Chem 50: 611-626

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	608

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2QU5	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a benzimidazole inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2007) J Med Chem 50: 4351-4373

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	276

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2QU6	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a benzoxazole inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2007) J Med Chem 50: 4351-4373

Released	2007-09-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	857, SO4

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3B8Q	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a naphthamide inhibitor

Whittington, D.A., Long, A.M., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 1649-1667

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	900

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3B8R	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a naphthamide inhibitor

Whittington, D.A., Long, A.M., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 1668-1680

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	887, EDO

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3BE2	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a benzamide inhibitor

Whittington, D.A., Kim, J.L., Long, A.M., Gu, Y., Rose, P., Zhao, H.

(2008) J Med Chem 51: 1649-1667

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	RAJ

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3CP9	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a pyridone inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 3065-3068

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	C19

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3CPB	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a bisamide inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 3065-3068

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	C92

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3CPC	Download File View File

Crystal structure of the VEGFR2 kinase domain in complex with a pyridone inhibitor

Whittington, D.A., Long, A.M., Rose, P., Gu, Y., Zhao, H.

(2008) J Med Chem 51: 3065-3068

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	C52

1 to 25 of 78 Structures

Page 1 of 4

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