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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gorelik, A."

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Mus musculus (23)
	Homo sapiens (14)
	Oryctolagus cuniculus (6)
	Danio rerio (5)
	Cavia porcellus (4)
	Canis lupus familiaris (2)
	Xenopus laevis (2)
	Balaenoptera acutorostrata (1)
	Caenorhabditis elegans (1)
	Clostridium perfringens ATCC 13124 (1)

More...

Taxonomy

	Eukaryota (60)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (61)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (62)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (18)
	2.0 - 2.5 (11)
	2.5 - 3.0 (22)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (45)
	2020 - 2024 (17)

Enzyme Classification Name

	Hydrolases (48)
	Transferases (4)

Membrane Protein Annotation

OPM (10)

Symmetry Type

	Asymmetric (46)
	Cyclic (17)
	Dihedral (1)

SCOP Classification

All alpha proteins (1)

AllSelected

1 to 25 of 62 Structures

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5FC1 \| pdb_00005fc1	Download File View File

Murine SMPDL3A in complex with sulfate

Gorelik, A., Illes, K., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 6376-6385

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.389 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3a (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5FC5 \| pdb_00005fc5	Download File View File

Murine SMPDL3A in complex with phosphocholine

Gorelik, A., Illes, K., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 6376-6385

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.678 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3a (protein)
Unique Ligands	GOL, PC, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5FC6 \| pdb_00005fc6	Download File View File

Murine SMPDL3A in complex with ADP analog AMPCP

Gorelik, A., Illes, K., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 6376-6385

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.658 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3a (protein)
Unique Ligands	AP2, GOL, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5FC7 \| pdb_00005fc7	Download File View File

Murine SMPDL3A in complex with sulfate (tetragonal)

Gorelik, A., Illes, K., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 6376-6385

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.456 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3a (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	FUC, NAG

Explore in 3D

5FCA \| pdb_00005fca	Download File View File

Murine SMPDL3A in presence of excess zinc

Gorelik, A., Illes, K., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 6376-6385

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.924 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3a (protein)
Unique Ligands	GOL, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5FCB \| pdb_00005fcb	Download File View File

Murine SMPDL3A in complex with AMP

Gorelik, A., Illes, K., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 6376-6385

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3a (protein)
Unique Ligands	AMP, GOL, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

5FI9 \| pdb_00005fi9	Download File View File

Closed form of murine Acid Sphingomyelinase in complex with bisphosphonate inhibitor AbPA

Gorelik, A., Illes, K., Heinz, L.X., Superti-Furga, G., Nagar, B.

(2016) Nat Commun 7: 12196-12196

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.543 Å
Organisms	Mus musculus
Macromolecule	Sphingomyelin phosphodiesterase (protein)
Unique Ligands	NT8, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5FIB \| pdb_00005fib	Download File View File

Open form of murine Acid Sphingomyelinase

Gorelik, A., Illes, K., Heinz, L.X., Superti-Furga, G., Nagar, B.

(2016) Nat Commun 7: 12196-12196

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	Sphingomyelin phosphodiesterase (protein)
Unique Ligands	NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5FIC \| pdb_00005fic	Download File View File

Open form of murine Acid Sphingomyelinase in presence of lipid

Gorelik, A., Illes, K., Heinz, L.X., Superti-Furga, G., Nagar, B.

(2016) Nat Commun 7: 12196-12196

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	Sphingomyelin phosphodiesterase (protein)
Unique Ligands	6E0, CL, NAG, PO4, ZN
Unique branched monosaccharides	BMA, FUC, NAG

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5HQN \| pdb_00005hqn	Download File View File

Catalytic domain of murine Acid Sphingomyelinase (ASMase, ASM, SMPD1)

Gorelik, A., Illes, K., Heinz, L.X., Superti-Furga, G., Nagar, B.

(2016) Nat Commun 7: 12196-12196

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	Sphingomyelin phosphodiesterase (protein)
Unique Ligands	NAG, PO4, ZN
Unique branched monosaccharides	FUC, NAG

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5KAR \| pdb_00005kar	Download File View File

Murine acid sphingomyelinase-like phosphodiesterase 3b (SMPDL3B)

Gorelik, A., Illes, K., Heinz, L.X., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 24054-24064

Released	2016-10-05
Method	X-RAY DIFFRACTION 1.142 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3b (protein)
Unique Ligands	GOL, NO3, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5KAS \| pdb_00005kas	Download File View File

Murine acid sphingomyelinase-like phosphodiesterase 3b (SMPDL3B) with phosphocholine

Gorelik, A., Illes, K., Heinz, L.X., Superti-Furga, G., Nagar, B.

(2016) J Biological Chem 291: 24054-24064

Released	2016-10-05
Method	X-RAY DIFFRACTION 1.619 Å
Organisms	Mus musculus
Macromolecule	Acid sphingomyelinase-like phosphodiesterase 3b (protein)
Unique Ligands	NO3, PC, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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5LGV \| pdb_00005lgv	Download File View File

GlgE isoform 1 from Streptomyces coelicolor E423A mutant soaked in maltooctaose

Syson, K., Stevenson, C.E.M., Mia, F., Barclay, J.E., Tang, M., Gorelik, A., Rashid, A.M., Lawson, D.M., Bornemann, S.

(2016) J Biological Chem 291: 21531-21540

Released	2016-08-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1 (protein)
Unique branched monosaccharides	GLC

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5LGW \| pdb_00005lgw	Download File View File

GlgE isoform 1 from Streptomyces coelicolor D394A mutant co-crystallised with maltodextrin

Syson, K., Stevenson, C.E.M., Mia, F., Barclay, J.E., Tang, M., Gorelik, A., Rashid, A.M., Lawson, D.M., Bornemann, S.

(2016) J Biological Chem 291: 21531-21540

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces coelicolor
Macromolecule	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1 (protein)
Unique Ligands	CIT, EDO
Unique branched monosaccharides	BGC, GLC

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5TCD \| pdb_00005tcd	Download File View File

Human alkaline sphingomyelinase (ENPP7) in complex with phosphocholine

Gorelik, A., Liu, F., Illes, K., Nagar, B.

(2017) J Biological Chem 292: 7087-7094

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ectonucleotide pyrophosphatase/phosphodiesterase family member 7 (protein)
Unique Ligands	IOD, NA, NAG, PC, ZN
Unique branched monosaccharides	BMA, FUC, NAG

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5U7Z \| pdb_00005u7z	Download File View File

Human acid ceramidase (ASAH1, aCDase) self-activated

Gebai, A., Gorelik, A., Illes, K., Nagar, B.

(2018) Nat Commun 9: 1621-1621

Released	2018-03-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Acid ceramidase (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, NAG

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5U81 \| pdb_00005u81	Download File View File

Acid ceramidase (ASAH1, aCDase) from naked mole rat, Cys143Ala, uncleaved

Gebai, A., Gorelik, A., Illes, K., Nagar, B.

(2018) Nat Commun 9: 1621-1621

Released	2018-03-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Heterocephalus glaber
Macromolecule	Acid ceramidase isoform b (protein)
Unique Ligands	1PE, CL, GOL, PG4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

5U84 \| pdb_00005u84	Download File View File

Acid ceramidase (ASAH1, aCDase) from common minke whale, Cys143Ala, uncleaved

Gebai, A., Gorelik, A., Illes, K., Nagar, B.

(2018) Nat Commun 9: 1621-1621

Released	2018-03-28
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Balaenoptera acutorostrata
Macromolecule	Acid ceramidase (protein)
Unique Ligands	I3C, IOD
Unique branched monosaccharides	FUC, NAG

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5U85 \| pdb_00005u85	Download File View File

Murine saposin-D (SapD), open conformation

Gebai, A., Gorelik, A., Illes, K., Nagar, B.

(2018) J Struct Biol 204: 145-150

Released	2018-06-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	Saposin-D (protein)

Explore in 3D

5UDY \| pdb_00005udy	Download File View File

Human alkaline sphingomyelinase (alk-SMase, ENPP7, NPP7)

Gorelik, A., Liu, F., Illes, K., Nagar, B.

(2017) J Biological Chem 292: 7087-7094

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ectonucleotide pyrophosphatase/phosphodiesterase family member 7 (protein)
Unique Ligands	IOD, NA, NAG, ZN
Unique branched monosaccharides	FUC, NAG

Explore in 3D

5VEM \| pdb_00005vem	Download File View File

Human ectonucleotide pyrophosphatase / phosphodiesterase 5 (ENPP5, NPP5)

Gorelik, A., Randriamihaja, A., Illes, K., Nagar, B.

(2017) FEBS J 284: 3718-3726

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	FUC, NAG

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5VEN \| pdb_00005ven	Download File View File

Murine ectonucleotide pyrophosphatase / phosphodiesterase 5 (ENPP5, NPP5)

Gorelik, A., Randriamihaja, A., Illes, K., Nagar, B.

(2017) FEBS J 284: 3718-3726

Released	2017-09-20
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Mus musculus
Macromolecule	Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 (protein)
Unique Ligands	NAG, PG4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

5VEO \| pdb_00005veo	Download File View File

Murine ectonucleotide pyrophosphatase / phosphodiesterase 5 (ENPP5, NPP5), inactive (T72A), in complex with AMP

Gorelik, A., Randriamihaja, A., Illes, K., Nagar, B.

(2017) FEBS J 284: 3718-3726

Released	2017-09-20
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Mus musculus
Macromolecule	Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 (protein)
Unique Ligands	AMP, EDO, NAG, PEG, PGE, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

5W78 \| pdb_00005w78	Download File View File

Human acyloxyacyl hydrolase (AOAH), proteolytically processed

Gorelik, A., Illes, K., Nagar, B.

(2018) Proc Natl Acad Sci U S A 115: E896-E905

Released	2018-01-03
Method	X-RAY DIFFRACTION 2.271 Å
Organisms	Homo sapiens
Macromolecule	Acyloxyacyl hydrolase (protein)
Unique Ligands	CA, DAO, MYR, PLM
Unique branched monosaccharides	NAG

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5W7A \| pdb_00005w7a	Download File View File

Rabbit acyloxyacyl hydrolase (AOAH), proteolytically processed, S262A mutant, with LPS (low quality saposin domain)

Gorelik, A., Illes, K., Nagar, B.

(2018) Proc Natl Acad Sci U S A 115: E896-E905

Released	2018-01-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Acyloxyacyl hydrolase large subunit (protein) Acyloxyacyl hydrolase small subunit (protein)
Unique Ligands	CA, FTT, NAG, P6G, PO4
Unique branched monosaccharides	NAG

1 to 25 of 62 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5FC1 | pdb_00005fc1

5FC5 | pdb_00005fc5

5FC6 | pdb_00005fc6

5FC7 | pdb_00005fc7

5FCA | pdb_00005fca

5FCB | pdb_00005fcb

5FI9 | pdb_00005fi9

5FIB | pdb_00005fib

5FIC | pdb_00005fic

5HQN | pdb_00005hqn

5KAR | pdb_00005kar

5KAS | pdb_00005kas

5LGV | pdb_00005lgv

5LGW | pdb_00005lgw

5TCD | pdb_00005tcd

5U7Z | pdb_00005u7z

5U81 | pdb_00005u81

5U84 | pdb_00005u84

5U85 | pdb_00005u85

5UDY | pdb_00005udy

5VEM | pdb_00005vem

5VEN | pdb_00005ven

5VEO | pdb_00005veo

5W78 | pdb_00005w78

5W7A | pdb_00005w7a