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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gavira, J.A."

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	synthetic construct (25)
	Escherichia coli (14)
	Gallus gallus (11)
	Pseudomonas putida KT2440 (10)
	Phacoides pectinatus (7)
	Streptomyces rubiginosus (7)
	Pseudomonas aeruginosa (6)
	Homo sapiens (4)
	Pseudomonas aeruginosa PAO1 (4)
	Sinorhizobium meliloti (3)

More...

Taxonomy

	Bacteria (60)
	Eukaryota (34)
	other sequences (25)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (120)

Polymer Entity Type

Protein (120)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (28)
	1.5 - 2.0 (34)
	2.0 - 2.5 (40)
	2.5 - 3.0 (12)
	3.0 - 3.5 (4)

Release Date

	2005 - 2009 (20)
	2010 - 2014 (39)
	2015 - 2019 (22)
	2020 - 2024 (37)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (29)
	Isomerases (7)
	Oxidoreductases (5)
	Ligases (2)
	Transferases (2)

Symmetry Type

	Asymmetric (81)
	Cyclic (30)
	Dihedral (14)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	Alpha and beta proteins (a+b) (10)
	All beta proteins (13)
	All alpha proteins (7)
	Artifacts (6)

AllSelected

1 to 25 of 120 Structures

Page 1 of 5

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1Z2U \| pdb_00001z2u	Download File View File

The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance

Gavira, J.A., DiGiamamarino, E., Tempel, W., Liu, Z.J., Wang, B.C., Meehan, E., Ng, J.D., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Caenorhabditis elegans
Macromolecule	Ubiquitin-conjugating enzyme E2 2 (protein)
Unique Ligands	BU3, CL, NA, UNX

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1Z3D \| pdb_00001z3d	Download File View File

Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans

Gavira, J.A., DiGiammarino, E., Tempel, W., Toh, D., Liu, Z.J., Wang, B.C., Meehan, E., Ng, J.D., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Caenorhabditis elegans
Macromolecule	Ubiquitin-conjugating enzyme E2 1 (protein)

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1ZZY \| pdb_00001zzy	Download File View File

Crystal Structure of Thioredoxin Mutant L7V

Gavira, J.A., Perez-Jimenez, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2005-07-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin 1 (protein)

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2BDZ \| pdb_00002bdz	Download File View File

Mexicain from Jacaratia mexicana

Gavira, J.A., Oliver-Salvador, M.C., Gonzalez-Ramirez, L.A., Soriano-Garcia, M., Garcia-Ruiz, J.M.

To be published

Released	2006-10-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Jacaratia mexicana
Macromolecule	Mexicain (protein)
Unique Ligands	E64

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2FCH \| pdb_00002fch	Download File View File

Crystal Structure of Thioredoxin Mutant G74S

Gavira, J.A., Perez-Jimenez, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin 1 (protein)
Unique Ligands	MPD

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2FD3 \| pdb_00002fd3	Download File View File

Crystal Structure of Thioredoxin Mutant P34H

Gavira, J.A., Perez-Jimenez, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin 1 (protein)

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2H6X \| pdb_00002h6x	Download File View File

Crystal Structure of Thioredoxin Wild Type in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H6Y \| pdb_00002h6y	Download File View File

Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H6Z \| pdb_00002h6z	Download File View File

Crystal Structure of Thioredoxin Mutant E44D in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

(2005) Biophys J 89: 3320-3331

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H70 \| pdb_00002h70	Download File View File

Crystal Structure of Thioredoxin Mutant D9E in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

(2005) Biophys J 89: 3320-3331

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H71 \| pdb_00002h71	Download File View File

Crystal Structure of Thioredoxin Mutant D47E in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H72 \| pdb_00002h72	Download File View File

Crystal Structure of Thioredoxin mutant E85D in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H73 \| pdb_00002h73	Download File View File

Crystal Structure of Thioredoxin Mutant D43E in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H74 \| pdb_00002h74	Download File View File

Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H75 \| pdb_00002h75	Download File View File

Crystal Structure of Thioredoxin Mutant D13E in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2H76 \| pdb_00002h76	Download File View File

Crystal Structure of Thioredoxin Mutant D10E in Hexagonal (p61) Space Group

Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	Thioredoxin (protein)
Unique Ligands	MPD

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2OLP \| pdb_00002olp	Download File View File

Structure and ligand selection of hemoglobin II from Lucina pectinata

Gavira, J.A., Camara-Artigas, A., de Jesus, W., Lopez-Garriga, J., Garcia-Ruiz, J.M.

(2008) J Biological Chem 283: 9414-9423

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.932 Å
Organisms	Phacoides pectinatus
Macromolecule	Hemoglobin II (protein)
Unique Ligands	HEM, OXY, SO4

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2YFA \| pdb_00002yfa	Download File View File

X-ray structure of McpS ligand binding domain in complex with malate

Pineda-Molina, E., Gavira, J.A., Krell, T.

(2012) Proc Natl Acad Sci U S A 109: 18926

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER (protein)
Unique Ligands	ACT, LMR, NA, SO4

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2YFB \| pdb_00002yfb	Download File View File

X-ray structure of McpS ligand binding domain in complex with succinate

Gavira, J.A., Pineda-Molina, E., Krell, T.

(2012) Proc Natl Acad Sci U S A 109: 18926

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida KT2440
Macromolecule	METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER (protein)
Unique Ligands	ACT, SIN, SO4