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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Gao, X."

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Search Summary

This query matches 188 Structures.

Refinements

Structure Determination Methodology

experimental (188)

Scientific Name of Source Organism

	Homo sapiens (61)
	Severe acute respiratory syndrome coronavirus 2 (44)
	synthetic construct (25)
	Enterobacteria phage T6 (11)
	Aspergillus terreus (9)
	Bacillus subtilis A29 (9)
	Mus musculus (9)
	Mycobacterium tuberculosis H37Rv (8)
	Bos taurus (7)
	Bacteroides fragilis (6)

More...

Taxonomy

	Eukaryota (96)
	Bacteria (76)
	Riboviria (52)
	other sequences (25)
	Duplodnaviria (14)
	Archaea (3)

Experimental Method

	X-RAY DIFFRACTION (91)
	ELECTRON MICROSCOPY (79)
	SOLUTION NMR (18)

Polymer Entity Type

	Protein (174)
	DNA (20)
	RNA (12)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (15)
	2.0 - 2.5 (37)
	2.5 - 3.0 (24)
	3.0 - 3.5 (31)
	3.5 - 4.0 (24)
	4.0 - 4.5 (12)
	> 4.5 (19)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (20)
	2005 - 2009 (8)
	2010 - 2014 (26)
	2015 - 2019 (13)
	2020 - 2024 (106)
	2025 - 2029 (11)

Enzyme Classification Name

	Oxidoreductases (10)
	Hydrolases (38)
	Transferases (18)
	Translocases (7)
	Isomerases (10)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (28)
	MemProtMD (19)
	OPM (15)
	mpstruc (22)

Symmetry Type

	Asymmetric (118)
	Cyclic (55)
	Dihedral (10)

SCOP Classification

	Membrane and cell surface proteins and peptides (8)
	Alpha and beta proteins (a+b) (16)
	Alpha and beta proteins (a/b) (9)
	All beta proteins (10)
	Artifacts (13)
	All alpha proteins (10)

AllSelected

1 to 25 of 188 Structures

Page 1 of 8

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1AC3 \| pdb_00001ac3	Download File View File

SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES

Cross, C.W., Rice, J.S., Gao, X.

(1997) Biochemistry 36: 4096-4107

Released	1997-06-16
Method	SOLUTION NMR
Macromolecule	ANTISENSE HYBRID DUPLEX (nucleic acid) DNA (5'-D((TCP)PTPGPCPGPC)-3') (nucleic acid)

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1CX5 \| pdb_00001cx5	Download File View File

ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE

Yang, X., Han, X., Cross, C., Sanghvi, Y., Gao, X.

(1999) Biochemistry 38: 12586-12596

Released	1999-09-14
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPTPT(MMT)PTPGPCPGPC) (nucleic acid) 5'-R(GPCPGPCPAPAPAPAPCPGPCPG) (nucleic acid)

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1D83 \| pdb_00001d83	Download File View File

STRUCTURE REFINEMENT OF THE CHROMOMYCIN DIMER/DNA OLIGOMER COMPLEX IN SOLUTION

Gao, X., Mirau, P., Patel, D.J.

(1992) J Mol Biology 223: 259-279

Released	1993-07-15
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APAPGPGPCPCPTPT)-3') (nucleic acid)
Unique Ligands	CPH, MG
Unique branched monosaccharides	1GL, ARI, CDR, ERI

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1K5I \| pdb_00001k5i	Download File View File

NMR Structure of a Ribosomal RNA Hairpin Containing a Conserved CUCAA Pentaloop

Nagaswamy, U., Gao, X., Martinis, S.A., Fox, G.E.

(2001) Nucleic Acids Res 29: 5129-5139

Released	2001-10-17
Method	SOLUTION NMR
Macromolecule	5'-R(PGPGPAPCPCPCPGPGPGPCPUPCPAPAPCPCPUPGPGPGPUPCP*C)-3' (nucleic acid)

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1KVH \| pdb_00001kvh	Download File View File

NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore

Gao, X., Stassinopoulos, A., Ji, J., Kwon, Y., Bare, S., Goldberg, I.H.

(2002) Biochemistry 41: 5131-5143

Released	2002-06-19
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPCPGPAPTPGPC)-3' (nucleic acid) 5'-D(GPCPAPAPTPTPCPGPGPG)-3' (nucleic acid)
Unique Ligands	NCS

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1L0L \| pdb_00001l0l	Download File View File

structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, FMX, HEM

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1L0N \| pdb_00001l0n	Download File View File

native structure of bovine mitochondrial cytochrome bc1 complex

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1MP7 \| pdb_00001mp7	Download File View File

A Third Complex of Post-Activated Neocarzinostatin Chromophore with DNA. Bulge DNA Binding from the Minor Groove

Kwon, Y., Xi, Z., Kappen, L.S., Goldberg, I.H., Gao, X.

(2003) Biochemistry 42: 1186-1198

Released	2003-02-18
Method	SOLUTION NMR
Macromolecule	5'-D(GPCPCPAPGPAPGPAPGPC)-3' (nucleic acid)
Unique Ligands	NCG

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1NOQ \| pdb_00001noq	Download File View File

e-motif structure

Zheng, M., Huang, X., Smith, G.K., Yang, X., Gao, X.

(1996) J Mol Biology 264: 323-336

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPGPCPCPG)-3' (nucleic acid)

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1NP5 \| pdb_00001np5	Download File View File

(GAC)3 parallel duplex

Zheng, M., Han, X., Gao, X.

To be published

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(GPAPCPGPAPCPGPAP*C)-3' (nucleic acid)

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1NTK \| pdb_00001ntk	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Antimycin A1

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	AY1, FES, HEM

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1NTM \| pdb_00001ntm	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complex at 2.4 Angstrom

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1NTZ \| pdb_00001ntz	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complex Bound with Ubiquinone

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, UQ2

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1NU1 \| pdb_00001nu1	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complexed with 2-nonyl-4-hydroxyquinoline N-oxide (NQNO)

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, QNO

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1Q3H \| pdb_00001q3h	Download File View File

mouse CFTR NBD1 with AMP.PNP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ANP, MG

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1R0W \| pdb_00001r0w	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) apo

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY

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1R0X \| pdb_00001r0x	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ATP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ATP, MG

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1R0Y \| pdb_00001r0y	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ADP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ADP

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1R0Z \| pdb_00001r0z	Download File View File

Phosphorylated Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ATP

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ATP, MG

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1R10 \| pdb_00001r10	Download File View File

Cystic fibrosis transmembrane conductance regulator (CFTR) nucleotide-binding domain one (NBD1) with ATP, I4122 space group

Lewis, H.A., Buchanan, S.G., Burley, S.K., Conners, K., Dickey, M., Dorwart, M., Fowler, R., Gao, X., Guggino, W.B., Hendrickson, W.A.

(2004) EMBO J 23: 282-293

Released	2003-12-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Cystic fibrosis transmembrane conductance regulator (protein)
Unique Ligands	ACY, ATP, MG

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1XBA \| pdb_00001xba	Download File View File

Crystal structure of apo syk tyrosine kinase domain

Atwell, S., Adams, J.M., Badger, J., Buchanan, M.D., Feil, I.K., Froning, K.J., Gao, X., Hendle, J., Keegan, K., Leon, B.C., Muller-Deickmann, H.J., Nienaber, V.L., Noland, B.W., Post, K., Rajashankar, K.R., Ramos, A., Russell, M., Burley, S.K., Buchanan, S.G.

(2004) J Biological Chem 279: 55827-55832

Released	2004-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)

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1XBB \| pdb_00001xbb	Download File View File

Crystal structure of the syk tyrosine kinase domain with Gleevec

Nienaber, V.L., Atwell, S., Adams, J.M., Badger, J., Buchanan, M.D., Feil, I.K., Froning, K.J., Gao, X., Hendle, J., Keegan, K., Leon, B.C., Muller-Deickmann, H.J., Noland, B.W., Post, K., Rajashankar, K.R., Ramos, A., Russell, M., Burley, S.K., Buchanan, S.G.

(2004) J Biological Chem 279: 55827-55832

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	STI

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1XBC \| pdb_00001xbc	Download File View File

Crystal structure of the syk tyrosine kinase domain with Staurosporin

Badger, J., Atwell, S., Adams, J.M., Buchanan, M.D., Feil, I.K., Froning, K.J., Gao, X., Hendle, J., Keegan, K., Leon, B.C., Muller-Deickmann, H.J., Nienaber, V.L., Noland, B.W., Post, K., Rajashankar, K.R., Ramos, A., Russell, M., Burley, S.K., Buchanan, S.G.

(2004) J Biological Chem 279: 55827-55832

Released	2004-11-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase SYK (protein)
Unique Ligands	STU

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2HEM \| pdb_00002hem	Download File View File

NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit.

Zhao, Q., Nagaswamy, U., Lee, H., Xia, Y., Gao, X., Fox, G.

(2005) Nucleic Acids Res 33: 3145-3153

Released	2006-09-12
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	5'-R(PGPGPGPAPAPGPGPCPGPCPUPUPCPGPGPCPGPUPCPGPGPCPCPC)-3' (nucleic acid)