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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fu, W."

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (15)
	Severe acute respiratory syndrome coronavirus 2 (13)
	African swine fever virus (5)
	Sus scrofa (5)
	Bos taurus (4)
	Echovirus E3 (4)
	Mus musculus (4)
	Escherichia coli K-12 (3)
	Rattus norvegicus (3)
	Streptomyces coelicolor A3(2) (3)

More...

Taxonomy

	Eukaryota (26)
	Riboviria (18)
	Bacteria (6)
	Varidnaviria (5)
	Monodnaviria (4)
	other sequences (3)

Experimental Method

	ELECTRON MICROSCOPY (29)
	X-RAY DIFFRACTION (8)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (40)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (8)
	3.0 - 3.5 (9)
	3.5 - 4.0 (10)
	4.0 - 4.5 (5)

Release Date

	2005 - 2009 (4)
	2015 - 2019 (7)
	2020 - 2024 (25)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (3)

Membrane Protein Annotation

PDBTM (2)

Symmetry Type

	Asymmetric (26)
	Cyclic (11)
	Icosahedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)

AllSelected

1 to 25 of 40 Structures

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1TX7 \| pdb_00001tx7	Download File View File

Bovine Trypsin complexed with p-amidinophenylmethylphosphinic acid (AMPA)

Cui, J., Marankan, F., Fu, W., Crich, D., Mesecar, A., Johnson, M.E.

(2002) Bioorg Med Chem 10: 41-46

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bos taurus
Macromolecule	Trypsinogen (protein)
Unique Ligands	4CM, CA

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2ALV \| pdb_00002alv	Download File View File

X-ray structural analysis of SARS coronavirus 3CL proteinase in complex with designed anti-viral inhibitors

Ghosh, A.K., Xi, K., Ratia, K., Santarsiero, B.D., Fu, W., Harcourt, B.H., Rota, P.A., Baker, S.C., Johnson, M.E., Mesecar, A.D.

(2005) J Med Chem 48: 6767-6771

Released	2006-08-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Replicase polyprotein 1ab (protein)
Unique Ligands	CY6

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2JSO \| pdb_00002jso	Download File View File

Antimicrobial resistance protein

Jin, C., Fu, W.

(2007) Biochem Biophys Res Commun 361: 1033-1037

Released	2007-09-04
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Polymyxin resistance protein pmrD (protein)

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2MT9 \| pdb_00002mt9	Download File View File

Solution structure of holo_FldB

Jin, C., Fu, W., Ye, Q.

(2014) J Biomol NMR 60: 283-288

Released	2016-03-09
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Flavodoxin-2 (protein)
Unique Ligands	FMN

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2MTB \| pdb_00002mtb	Download File View File

Solution structure of apo_FldB

Jin, C., Fu, W., Ye, Q.

(2014) J Biomol NMR 60: 283-288

Released	2016-03-09
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Flavodoxin-2 (protein)

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2W6C \| pdb_00002w6c	Download File View File

ACHE IN COMPLEX WITH A BIS-(-)-NOR-MEPTAZINOL DERIVATIVE

Paz, A., Xie, Q., Greenblatt, H.M., Fu, W., Tang, Y., Silman, I., Qiu, Z., Sussman, J.L.

(2009) J Med Chem 52: 2543

Released	2009-04-07
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Tetronarce californica
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	BM4, NAG
Unique branched monosaccharides	NAG

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5EX0 \| pdb_00005ex0	Download File View File

Crystal structure of human SMYD3 in complex with a MAP3K2 peptide

Fu, W., Liu, N., Qiao, Q., Wang, M., Min, J., Zhu, B., Xu, R.M., Yang, N.

(2016) J Biological Chem 291: 9173-9180

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SMYD3 (protein) MAP3K2 peptide (protein)
Unique Ligands	ACY, SAH, ZN

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5EX3 \| pdb_00005ex3	Download File View File

Crystal structure of human SMYD3 in complex with a VEGFR1 peptide

Qiao, Q., Fu, W., Liu, N., Wang, M., Min, J., Zhu, B., Xu, R.M., Yang, N.

(2016) J Biological Chem 291: 9173-9180

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.408 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SMYD3 (protein) VEGFR1 peptide (protein)
Unique Ligands	ACY, SAH, ZN

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5ZMM \| pdb_00005zmm	Download File View File

Structure of the Type IV phosphorothioation-dependent restriction endonuclease ScoMcrA

Liu, G., Fu, W., Zhang, Z., He, Y., Yu, H., Zhao, Y., Deng, Z., Wu, G., He, X.

(2018) Nat Commun 9: 4689-4689

Released	2018-09-26
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Uncharacterized protein McrA (protein)
Unique Ligands	SO4, ZN

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5ZMN \| pdb_00005zmn	Download File View File

Sulfur binding domain and SRA domain of ScoMcrA complexed with phosphorothioated DNA

Liu, G., Fu, W., Zhang, Z., He, Y., Yu, H., Zhao, Y., Deng, Z., Wu, G., He, X.

(2018) Nat Commun 9: 4689-4689

Released	2018-09-26
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Streptomyces coelicolor A3(2) Streptomyces lividans
Macromolecule	Uncharacterized protein McrA (protein) DNA (5'-D(CPCPCPGP(GS)PCPCPGPGPG)-3') (nucleic acid)
Unique Ligands	SO4

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5ZMO \| pdb_00005zmo	Download File View File

Sulfur binding domain of ScoMcrA complexed with phosphorothioated DNA

Liu, G., Fu, W., Zhang, Z., He, Y., Yu, H., Zhao, Y., Deng, Z., Wu, G., He, X.

(2018) Nat Commun 9: 4689-4689

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Streptomyces coelicolor A3(2) Streptomyces lividans
Macromolecule	Uncharacterized protein McrA (protein) DNA (5'-D(PCPCPGP(GS)PCPCPGPG)-3') (nucleic acid)
Unique Ligands	PO4

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7WTF \| pdb_00007wtf	Download File View File

SARS-CoV-2 Omicron variant spike in complex with Fab XGv051

Wang, X., Fu, W.

(2022) Cell Res 32: 691-694

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of XGv051 (protein) Light chain of XGv051 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7WTG \| pdb_00007wtg	Download File View File

SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv051

Wang, X., Fu, W.

(2022) Cell Res 32: 691-694

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of XGv051 (protein) Light chain of XGv051 (protein) Spike protein S1 (protein)

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7WTH \| pdb_00007wth	Download File View File

SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv264

Wang, X., Fu, W.

(2022) Cell Res 32: 691-694

Released	2022-12-14
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of XGv264 (protein) Light chain of XGv264 (protein) Spike protein S1 (protein)

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7WTI \| pdb_00007wti	Download File View File

SARS-CoV-2 Omicron variant spike in complex with Fab XGv264

Wang, X., Fu, W.

(2022) Cell Res 32: 691-694

Released	2022-12-21
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of XGv264 (protein) Light chain of XGv264 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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7WTJ \| pdb_00007wtj	Download File View File

SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv286

Wang, X., Fu, W.

(2022) Cell Res 32: 691-694

Released	2022-12-14
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of XGv286 (protein) Light chain of XGv286 (protein) Spike protein S1 (protein)

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7WTK \| pdb_00007wtk	Download File View File

SARS-CoV-2 Omicron variant spike in complex with Fab XGv286

Wang, X., Fu, W.

(2022) Cell Res 32: 691-694

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of XGv286 (protein) Light chain of XGv286 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7YBH \| pdb_00007ybh	Download File View File

SARS-CoV-2 lambda variant spike

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-08-09
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7YBI \| pdb_00007ybi	Download File View File

SARS-CoV-2 Mu variant spike (open state)

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-07-12
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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7YBJ \| pdb_00007ybj	Download File View File

SARS-CoV-2 Mu variant spike(close state)

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.73 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)

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7YBK \| pdb_00007ybk	Download File View File

SARS-CoV-2 B.1.620 variant spike (open state)

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-09-06
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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7YBL \| pdb_00007ybl	Download File View File

SARS-CoV-2 B.1.620 variant spike (close state)

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-08-09
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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7YBM \| pdb_00007ybm	Download File View File

SARS-CoV-2 C.1.2 variant spike (Close state)

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-08-09
Method	ELECTRON MICROSCOPY 3.45 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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7YBN \| pdb_00007ybn	Download File View File

SARS-CoV-2 C.1.2 variant spike (Open state)

Wang, X., Fu, W.

(2022) Virol Sin 37: 938-941

Released	2023-11-29
Method	ELECTRON MICROSCOPY 3.82 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)

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8GSC \| pdb_00008gsc	Download File View File

Echovirus3 A-particle in complex with 6D10 Fab

Wang, X., Fu, W.

(2022) Viruses 14:

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Echovirus E3 Mus musculus
Macromolecule	Heavy chain of 6D10 (protein) Light chain of 6D10 (protein) VP1 (protein) VP2 (protein) VP3 (protein)

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1TX7 | pdb_00001tx7

2ALV | pdb_00002alv

2JSO | pdb_00002jso

2MT9 | pdb_00002mt9

2MTB | pdb_00002mtb

2W6C | pdb_00002w6c

5EX0 | pdb_00005ex0

5EX3 | pdb_00005ex3

5ZMM | pdb_00005zmm

5ZMN | pdb_00005zmn

5ZMO | pdb_00005zmo

7WTF | pdb_00007wtf

7WTG | pdb_00007wtg

7WTH | pdb_00007wth

7WTI | pdb_00007wti

7WTJ | pdb_00007wtj

7WTK | pdb_00007wtk

7YBH | pdb_00007ybh

7YBI | pdb_00007ybi

7YBJ | pdb_00007ybj

7YBK | pdb_00007ybk

7YBL | pdb_00007ybl

7YBM | pdb_00007ybm

7YBN | pdb_00007ybn

8GSC | pdb_00008gsc