RCSB PDB: Search

5TVN \| pdb_00005tvn	Download File View File

Crystal structure of the LSD-bound 5-HT2B receptor

Wacker, D., Wang, S., McCorvy, J.D., Betz, R.M., Venkatakrishnan, A.J., Levit, A., Lansu, K., Schools, Z.L., Che, T., Nichols, D.E., Shoichet, B.K., Dror, R.O., Roth, B.L.

(2017) Cell 168: 377-389.e12

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Chimera protein of human 5-hydroxytryptamine receptor 2B and E. Coli soluble cytochrome b562 (protein)
Unique Ligands	7LD, CLR, OLC, PEG, PO4

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5WIU \| pdb_00005wiu	Download File View File

Structure of the human D4 Dopamine receptor in complex with Nemonapride

Wacker, D., Wang, S., Levit, A., Che, T., Betz, R.M., McCorvy, J.D., Venkatakrishnan, A.J., Huang, X.-P., Dror, R.O., Shoichet, B.K., Roth, B.L.

(2017) Science 358: 381-386

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	D(4) dopamine receptor, soluble cytochrome b562 chimera (protein)
Unique Ligands	AQD, GOL, OLA, PEG, PO4

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5WIV \| pdb_00005wiv	Download File View File

Structure of the sodium-bound human D4 Dopamine receptor in complex with Nemonapride

Wacker, D., Wang, S., Levit, A., Che, T., Betz, R.M., McCorvy, J.D., Venkatakrishnan, A.J., Huang, X.-P., Dror, R.O., Shoichet, B.K., Roth, B.L.

(2017) Science 358: 381-386

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.143 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	D(4) dopamine receptor, soluble cytochrome b562 chimera (protein)
Unique Ligands	AQD, NA, OLA, PEG, PO4

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6B73 \| pdb_00006b73	Download File View File

Crystal Structure of a nanobody-stabilized active state of the kappa-opioid receptor

Che, T., Majumdar, S., Zaidi, S.A., Kormos, C., McCorvy, J.D., Wang, S., Mosier, P.D., Uprety, R., Vardy, E., Krumm, B.E., Han, G.W., Lee, M.Y., Pardon, E., Steyaert, J., Huang, X.P., Strachan, R.T., Tribo, A.R., Pasternak, G.W., Carroll, I.F., Stevens, R.C., Cherezov, V., Katritch, V., Wacker, D., Roth, B.L.

(2018) Cell 172: 55-67.e15

Released	2018-01-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Homo sapiens Lama glama
Macromolecule	Nanobody (protein) Soluble cytochrome b562, kappa-type opioid receptor (protein)
Unique Ligands	CLR, CVV, OLA

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6BQG \| pdb_00006bqg	Download File View File

Crystal structure of 5-HT2C in complex with ergotamine

Peng, Y., McCorvy, J.D., Harpsoe, K., Lansu, K., Yuan, S., Popov, P., Qu, L., Pu, M., Che, T., Nikolajse, L.F., Huang, X.P., Wu, Y., Shen, L., Bjorn-Yoshimoto, W.E., Ding, K., Wacker, D., Han, G.W., Cheng, J., Katritch, V., Jensen, A.A., Hanson, M.A., Zhao, S., Gloriam, D.E., Roth, B.L., Stevens, R.C., Liu, Z.

(2018) Cell 172: 719-730.e14

Released	2018-02-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5-hydroxytryptamine receptor 2C,Soluble cytochrome b562 (protein)
Unique Ligands	ERM, OLC

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6BQH \| pdb_00006bqh	Download File View File

Crystal structure of 5-HT2C in complex with ritanserin

Peng, Y., McCorvy, J.D., Harpsoe, K., Lansu, K., Yuan, S., Popov, P., Qu, L., Pu, M., Che, T., Nikolajse, L.F., Huang, X.P., Wu, Y., Shen, L., Bjorn-Yoshimoto, W.E., Ding, K., Wacker, D., Han, G.W., Cheng, J., Katritch, V., Jensen, A.A., Hanson, M.A., Zhao, S., Gloriam, D.E., Roth, B.L., Stevens, R.C., Liu, Z.

(2018) Cell 172: 719-730.e14

Released	2018-02-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5-hydroxytryptamine receptor 2C,Soluble cytochrome b562 (protein)
Unique Ligands	E2J, OLA, OLC, PEG

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6CM4 \| pdb_00006cm4	Download File View File

Structure of the D2 Dopamine Receptor Bound to the Atypical Antipsychotic Drug Risperidone

Wang, S., Che, T., Levit, A., Shoichet, B.K., Wacker, D., Roth, B.L.

(2018) Nature 555: 269-273

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.867 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	D(2) dopamine receptor, endolysin chimera (protein)
Unique Ligands	8NU, OLA, PEG

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6DRX \| pdb_00006drx	Download File View File

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor

McCorvy, J.D., Wacker, D., Wang, S., Agegnehu, B., Liu, J., Lansu, K., Tribo, A.R., Olsen, R.H.J., Che, T., Jin, J., Roth, B.L.

(2018) Nat Struct Mol Biol 25: 787-796

Released	2018-08-29
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5HT2B receptor, BRIL chimera (protein)
Unique Ligands	CLR, H8G, OLC

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6DRY \| pdb_00006dry	Download File View File

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor

McCorvy, J.D., Wacker, D., Wang, S., Agegnehu, B., Liu, J., Lansu, K., Tribo, A.R., Olsen, R.H.J., Che, T., Jin, J., Roth, B.L.

(2018) Nat Struct Mol Biol 25: 787-796

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.918 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5HT2B receptor, BRIL chimera (protein)
Unique Ligands	CLR, H8D, OLA, OLC, PEG, PO4

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6DRZ \| pdb_00006drz	Download File View File

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor

McCorvy, J.D., Wacker, D., Wang, S., Agegnehu, B., Liu, J., Lansu, K., Tribo, A.R., Olsen, R.H.J., Che, T., Jin, J., Roth, B.L.

(2018) Nat Struct Mol Biol 25: 787-796

Released	2018-08-29
Method	X-RAY DIFFRACTION 3.102 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5HT2B receptor, BRIL chimera (protein)
Unique Ligands	CLR, H8J, OLA, OLC, PEG, PO4

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6DS0 \| pdb_00006ds0	Download File View File

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor

McCorvy, J.D., Wacker, D., Wang, S., Agegnehu, B., Liu, J., Lansu, K., Tribo, A.R., Olsen, R.H.J., Che, T., Jin, J., Roth, B.L.

(2018) Nat Struct Mol Biol 25: 787-796

Released	2018-08-29
Method	X-RAY DIFFRACTION 3.188 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5HT2B receptor, BRIL chimera (protein)
Unique Ligands	CLR, H8M, OLC, PEG

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6VI4 \| pdb_00006vi4	Download File View File

Nanobody-Enabled Monitoring of Kappa Opioid Receptor States

Che, T., Roth, B.L.

(2020) Nat Commun 11: 1145-1145

Released	2020-03-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Kappa opioid receptor (protein) Nanobody 6 (protein)
Unique Ligands	CLR, JDC

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6WGT \| pdb_00006wgt	Download File View File

Crystal structure of HTR2A with hallucinogenic agonist

Kim, K.L., Che, T., Krumm, B.E., Roth, B.L.

(2020) Cell 182: 1574-1588

Released	2020-09-23
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5-hydroxytryptamine receptor 2A,Soluble cytochrome b562 fusion (protein)
Unique Ligands	1PE, 7LD, CLR, OLA, PEG, PO4

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6WH4 \| pdb_00006wh4	Download File View File

Crystal structure of HTR2A with inverse agonist

Kim, K.L., Che, T., Krumm, B.E., Roth, B.L.

(2020) Cell 182: 1574-1588

Released	2020-09-23
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	5-hydroxytryptamine receptor 2A,Soluble cytochrome b562 fusion (protein)
Unique Ligands	1PE, 89F, CLR, NDS, OLA, PEG

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7YIT \| pdb_00007yit	Download File View File

Molecular mechanism of biased signaling at the kappa opioid receptor

Kim, K., Che, T.

(2023) Nat Commun 14: 1338-1338

Released	2023-04-12
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli Homo sapiens Lama glama
Macromolecule	Kappa-type opioid receptor (protein) Nanobody39 (protein) Soluble cytochrome b562 (protein)
Unique Ligands	IVB

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8DZP \| pdb_00008dzp	Download File View File

momSalB bound Kappa Opioid Receptor in complex with Gi1

Fay, J.F., Che, T.

(2023) Nature 617: 417-425

Released	2023-05-03
Method	ELECTRON MICROSCOPY 2.71 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) Kappa-type opioid receptor (protein) ScFv16 protein (protein)
Unique Ligands	U99

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8DZQ \| pdb_00008dzq	Download File View File

momSalB bound Kappa Opioid Receptor in complex with GoA

Fay, J.F., Che, T.

(2023) Nature 617: 417-425

Released	2023-05-03
Method	ELECTRON MICROSCOPY 2.82 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(o) subunit alpha (protein) Kappa-type opioid receptor (protein) ScFv16 protein (protein)
Unique Ligands	U99

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8DZR \| pdb_00008dzr	Download File View File

GR89,696 bound Kappa Opioid Receptor in complex with gustducin

Fay, J.F., Che, T.

(2023) Nature 617: 417-425

Released	2023-05-03
Method	ELECTRON MICROSCOPY 2.61 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	G alpha gustducin protein (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Kappa-type opioid receptor (protein) ScFv16 protein (protein)
Unique Ligands	U9I

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8DZS \| pdb_00008dzs	Download File View File

GR89,696 bound Kappa Opioid Receptor in complex with Gz

Fay, J.F., Che, T.

(2023) Nature 617: 417-425

Released	2023-05-03
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(z) subunit alpha (protein) Kappa-type opioid receptor (protein) ScFv16 protein (protein)
Unique Ligands	U9I

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8FEG \| pdb_00008feg	Download File View File

CryoEM structure of Kappa Opioid Receptor bound to a semi-peptide and Gi1

Fay, J.F., Che, T.

(2023) Nat Commun 14: 8064

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.54 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6

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9CGJ \| pdb_00009cgj	Download File View File

CryoEM structure of delta opioid receptor bound to G proteins and a partial agonist

Fay, J.F., Che, T.

(2025) Nat Commun 16: 2518-2518

Released	2025-04-02
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Delta-type opioid receptor (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) ScFv16 protein (protein)
Unique Ligands	A1AWC

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9CGK \| pdb_00009cgk	Download File View File

CryoEM structure of delta opioid receptor bound to G proteins and a full bitopic agonist

Fay, J.F., Che, T.

(2025) Nat Commun 16: 2518-2518

Released	2025-04-02
Method	ELECTRON MICROSCOPY 2.62 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Delta-type opioid receptor (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) ScFv16 protein (protein)
Unique Ligands	A1AWD

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5TVN | pdb_00005tvn

5WIU | pdb_00005wiu

5WIV | pdb_00005wiv

6B73 | pdb_00006b73

6BQG | pdb_00006bqg

6BQH | pdb_00006bqh

6CM4 | pdb_00006cm4

6DRX | pdb_00006drx

6DRY | pdb_00006dry

6DRZ | pdb_00006drz

6DS0 | pdb_00006ds0

6VI4 | pdb_00006vi4

6WGT | pdb_00006wgt

6WH4 | pdb_00006wh4

7YIT | pdb_00007yit

8DZP | pdb_00008dzp

8DZQ | pdb_00008dzq

8DZR | pdb_00008dzr

8DZS | pdb_00008dzs

8FEG | pdb_00008feg

9CGJ | pdb_00009cgj

9CGK | pdb_00009cgk