RCSB PDB: Search

1JR9 \| pdb_00001jr9	Download File View File

Crystal Structure of manganese superoxide dismutases from Bacillus halodenitrificans

Liao, J., Liu, M.Y., Chang, T., Li, M., LeGall, J., Gui, L.L., Zhang, J.P., Jiang, T., Liang, D.C., Chang, W.R.

(2002) J Struct Biol 139: 171-180

Released	2002-08-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Virgibacillus halodenitrificans
Macromolecule	manganese superoxide dismutase (protein)
Unique Ligands	MN, ZN

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1KCB \| pdb_00001kcb	Download File View File

Crystal Structure of a NO-forming Nitrite Reductase Mutant: an Analog of a Transition State in Enzymatic Reaction

Liu, S.Q., Chang, T., Liu, M.Y., LeGall, J., Chang, W.C., Zhang, J.P., Liang, D.C., Chang, W.R.

(2003) Biochem Biophys Res Commun 302: 568-574

Released	2003-11-04
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Nitrite Reductase (protein)
Unique Ligands	CU

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1NB2 \| pdb_00001nb2	Download File View File

Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans

Chen, C.-J., Liu, M.-Y., Chang, W.-C., Chang, T., Wang, B.-C., Le Gall, J.

(2003) J Struct Biol 142: 247-255

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Virgibacillus halodenitrificans
Macromolecule	Nucleoside Diphosphate Kinase (protein)

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1PKU \| pdb_00001pku	Download File View File

Crystal Structure of Nucleoside Diphosphate Kinase from Rice

Huang, J.-Y., Chang, C.-Y., Chang, T., Chen, C.-J.

(2005) J Struct Biol 150: 309-318

Released	2005-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Oryza sativa
Macromolecule	Nucleoside Diphosphate Kinase I (protein)

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1RZP \| pdb_00001rzp	Download File View File

Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase from Achromobacter Cycloclastes at pH6.2

Li, H.T., Wang, C., Chang, T., Chang, W.C., Liu, M.Y., Le Gall, J., Gui, L.L., Zhang, J.P., An, X.M., Chang, W.R.

(2004) Biochem Biophys Res Commun 316: 107-113

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, MES, SO4

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1RZQ \| pdb_00001rzq	Download File View File

Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase from Achromobacter Cycloclastes at pH5.0

Li, H.T., Wang, C., Chang, T., Chang, W.C., Liu, M.Y., Le Gall, J., Gui, L.L., Zhang, J.P., An, X.M., Chang, W.R.

(2004) Biochem Biophys Res Commun 316: 107-113

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	ACY, CU, SO4

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2AVF \| pdb_00002avf	Download File View File

Crystal Structure of C-terminal Desundecapeptide Nitrite Reductase from Achromobacter cycloclastes

Li, H.T., Chang, T., Chang, W.C., Chen, C.J., Liu, M.Y., Gui, L.L., Zhang, J.P., An, X.M., Chang, W.R.

(2005) Biochem Biophys Res Commun 338: 1935-1942

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Achromobacter cycloclastes
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CL, CU

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6OGY \| pdb_00006ogy	Download File View File

In situ structure of Rotavirus RNA-dependent RNA polymerase at duplex-open state

Ding, K., Chang, T., Shen, W., Roy, P., Zhou, Z.H.

(2019) Nat Commun 10: 2216-2216

Released	2019-05-22
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Rotavirus A
Macromolecule	Inner capsid protein VP2 (protein) RNA-dependent RNA polymerase of rotavirus A (protein) RNA (5'-R(PAPGPCPC)-3') (nucleic acid) DNA/RNA (5'-D((GTG))-R(PGP*C)-3') (hybrid)

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6OGZ \| pdb_00006ogz	Download File View File

In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state

Ding, K., Chang, T., Shen, W., Roy, P., Zhou, Z.H.

(2019) Nat Commun 10: 2216-2216

Released	2019-05-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Rotavirus A
Macromolecule	Inner capsid protein VP2 (protein) RNA-dependent RNA polymerase of rotavirus A (protein) RNA (5'-R(PAPUPAPUPAPUPAPUPAPUPAPUPAPUPAPUPA)-3') (nucleic acid) RNA (5'-R(PUPAPUPAPUPAPUPAPUPAPUPAPUPAPUPAPUP*A)-3') (nucleic acid)
Unique Ligands	GTP, UTP

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7SIP \| pdb_00007sip	Download File View File

Structure of shaker-IR

Tan, X., Bae, C., Stix, R., Fernandez, A.I., Huffer, K., Chang, T., Jiang, J., Faraldo-Gomez, J.D., Swartz, K.J.

(2022) Sci Adv 8: eabm7814-eabm7814

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Drosophila melanogaster
Macromolecule	Potassium voltage-gated channel protein Shaker (protein)
Unique Ligands	K, POV

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7SJ1 \| pdb_00007sj1	Download File View File

Structure of shaker-W434F

Tan, X., Bae, C., Stix, R., Fernandez, A.I., Huffer, K., Chang, T., Jiang, J., Faraldo-Gomez, J.D., Swartz, K.J.

(2022) Sci Adv 8: eabm7814-eabm7814

Released	2022-03-30
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Drosophila melanogaster
Macromolecule	Potassium voltage-gated channel protein Shaker (protein)
Unique Ligands	K, POV

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7SX3 \| pdb_00007sx3	Download File View File

Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 1/2

Kschonsak, M., Chua, H.C., Weidling, C., Chakouri, N., Noland, C.L., Schott, K., Chang, T., Tam, C., Patel, N., Arthur, C.P., Leitner, A., Ben-Johny, M., Ciferri, C., Pless, S.A., Payandeh, J.

(2022) Nature 603: 180-186

Released	2021-12-29
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Protein unc-80 homolog (protein) Sodium leak channel non-selective protein,Enhanced green fluorescent protein (protein) Transmembrane protein FAM155A (protein) UNC79,Protein unc-79 homolog,Protein unc-79 homolog (protein)
Unique Ligands	NAG, PEV, PGV, Y01

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7SX4 \| pdb_00007sx4	Download File View File

Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 2/2

Kschonsak, M., Chua, H.C., Weidling, C., Chakouri, N., Noland, C.L., Schott, K., Chang, T., Tam, C., Patel, N., Arthur, C.P., Leitner, A., Ben-Johny, M., Ciferri, C., Pless, S.A., Payandeh, J.

(2022) Nature 603: 180-186

Released	2021-12-29
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Protein unc-80 homolog (protein) Sodium leak channel non-selective protein,Enhanced green fluorescent protein (protein) Transmembrane protein FAM155A (protein) UNC79,Protein unc-79 homolog (protein)
Unique Ligands	NAG, PEV, PGV, Y01

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8Z85 \| pdb_00008z85	Download File View File

Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 1

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-R(APGPAPGPAPAPAPUPCPAPAPGPGPCPAPGPUPU)-3') (nucleic acid) RNA (5'-R(GPAPCPUPGPCPCPUPGPUPUPUPUPUPGPCP*U)-3') (nucleic acid)

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8Z8J \| pdb_00008z8j	Download File View File

Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 2

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-R(APGPAPGPAPAPAPUPCPAPAPGPGPCPAPGPUPU)-3') (nucleic acid) RNA (5'-R(GPAPCPUPGPCPCPUPGPUPUPUPUPUPGPCP*U)-3') (nucleic acid)

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8Z8N \| pdb_00008z8n	Download File View File

Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 3

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.79 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-R(APGPAPGPAPAPAPUPCPAPAPGPGPCPAPGPUPU)-3') (nucleic acid) RNA (5'-R(GPAPCPUPGPCPCPUPGPUPUPUPUPUPGPCP*U)-3') (nucleic acid)

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8Z8X \| pdb_00008z8x	Download File View File

Cryo-EM structure of Thogoto virus polymerase in a transcription initiation conformation

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-R(APGPAPGPAPAPAPUPCPAPAPGPGPCPAPGPUPU)-3') (nucleic acid) RNA (5'-R(GPAPCPUPGPCPCPUPGPUPUPUPUPUPGPCP*U)-3') (nucleic acid)
Unique Ligands	G2P

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8Z90 \| pdb_00008z90	Download File View File

Cryo-EM structure of Thogoto virus polymerase in transcription initiation conformation 2

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.87 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-R(APGPAPGPAPAPAPUPCPAPAPGPGPCPAPGPUPU)-3') (nucleic acid) RNA (5'-R(GPAPCPUPGPCPCPUPGPUPUPUPUPUPGPCP*U)-3') (nucleic acid)
Unique Ligands	G2P

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8Z97 \| pdb_00008z97	Download File View File

Cryo-EM structure of Thogoto virus polymerase in a transcription elongation conformation

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	V9G

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8Z98 \| pdb_00008z98	Download File View File

Cryo-EM structure of Thogoto virus polymerase in a transcription reception conformation

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.52 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-R(PGPCPAPAPAPAPAPCP*A)-3') (nucleic acid)
Unique Ligands	V9G

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8Z9H \| pdb_00008z9h	Download File View File

Cryo-EM structure of Thogoto virus polymerase in a transcription elongation-reception conformation

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	V9G

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8Z9Q \| pdb_00008z9q	Download File View File

Cryo-EM structure of Thogoto virus polymerase in a replication reception conformation

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.33 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Polymerase acidic protein (protein) Polymerase basic protein 2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) RNA (5'-D((ATP))-R(PGPCPAPAPAPAPAPCPA)-3') (nucleic acid)

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8Z9R \| pdb_00008z9r	Download File View File

Cryo-EM structure of Thogoto virus polymerase in a replication elongation-reception conformation

Xue, L., Chang, T., Li, Z., Zhao, H., Li, M., He, J., Chen, X., Xiong, X.

(2024) Nat Commun 15: 4620-4620

Released	2024-05-29
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Thogoto virus (isolate SiAr 126)
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1JR9 | pdb_00001jr9

1KCB | pdb_00001kcb

1NB2 | pdb_00001nb2

1PKU | pdb_00001pku

1RZP | pdb_00001rzp

1RZQ | pdb_00001rzq

2AVF | pdb_00002avf

6OGY | pdb_00006ogy

6OGZ | pdb_00006ogz

7SIP | pdb_00007sip

7SJ1 | pdb_00007sj1

7SX3 | pdb_00007sx3

7SX4 | pdb_00007sx4

8Z85 | pdb_00008z85

8Z8J | pdb_00008z8j

8Z8N | pdb_00008z8n

8Z8X | pdb_00008z8x

8Z90 | pdb_00008z90

8Z97 | pdb_00008z97

8Z98 | pdb_00008z98

8Z9H | pdb_00008z9h

8Z9Q | pdb_00008z9q

8Z9R | pdb_00008z9r