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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Bzymek, K.P."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (40)
	synthetic construct (33)
	Mus musculus (32)
	Finegoldia magna (11)
	Staphylococcus aureus (8)
	Staphylococcus aureus subsp. aureus Mu50 (3)
	Aspergillus fumigatus Af293 (2)
	Vibrio proteolyticus (2)
	Yersinia pseudotuberculosis (1)

Taxonomy

	Eukaryota (43)
	other sequences (33)
	Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (24)
	2.5 - 3.0 (11)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (7)
	2015 - 2019 (37)

Enzyme Classification Name

	Oxidoreductases (2)
	Hydrolases (2)

Symmetry Type

	Asymmetric (43)
	Cyclic (3)

SCOP Classification

	All beta proteins (8)
	Artifacts (7)
	All alpha proteins (5)
	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (4)

AllSelected

1 to 25 of 46 Structures

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1LOK \| pdb_00001lok	Download File View File

The 1.20 Angstrom Resolution Crystal Structure of the Aminopeptidase from Aeromonas proteolytica Complexed with Tris: A Tale of Buffer Inhibition

Desmarais, W.T., Bienvenue, D.L., Bzymek, K.P., Holz, R.C., Petsko, G.A., Ringe, D.

(2002) Structure 10: 1063-1072

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Vibrio proteolyticus
Macromolecule	Bacterial leucyl aminopeptidase (protein)
Unique Ligands	NA, SCN, TRS, ZN

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2ANP \| pdb_00002anp	Download File View File

Functional Glutamate 151 to Histidine mutant of the aminopeptidase from Aeromonas Proteolytica.

Bzymek, K.P., Moulin, A., Swierczek, S.I., Ringe, D., Petsko, G.A., Holz, R.C.

(2005) Biochemistry 44: 12030-12040

Released	2005-10-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio proteolyticus
Macromolecule	leucyl aminopeptidase (protein)
Unique Ligands	NA, ZN

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3UEP \| pdb_00003uep	Download File View File

Crystal structure of YscQ-C from Yersinia pseudotuberculosis

Bzymek, K.P., Ghosh, P.

(2012) Biochemistry 51: 1669-1677

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Yersinia pseudotuberculosis
Macromolecule	YscQ-C, type III secretion protein (protein)

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4GW1 \| pdb_00004gw1	Download File View File

cQFD Meditope

Donaldson, J.M., Zer, C., Avery, K.N., Bzymek, K.P., Horne, D.A., Williams, J.C.

(2013) Proc Natl Acad Sci U S A 110: 17456-17461

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab heavy chain (protein) Fab light chain (protein) cQFD meditope (protein)
Unique Ligands	PO4

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4GW5 \| pdb_00004gw5	Download File View File

cQYN meditope - Cetuximab Fab

Donaldson, J.M., Zer, C., Avery, K.N., Bzymek, K.P., Horne, D.A., Williams, J.C.

(2013) Proc Natl Acad Sci U S A 110: 17456-17461

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab Heavy Chain (protein) Fab Light Chain (protein) cQYN meditope (protein)
Unique Ligands	PO4

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4HJG \| pdb_00004hjg	Download File View File

Meditope-enabled trastuzumab

Donaldson, J.M., Zer, C., Avery, K.N., Bzymek, K.P., Horne, D.A., Williams, J.C.

(2013) Proc Natl Acad Sci U S A 110: 17456-17461

Released	2013-10-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Finegoldia magna Homo sapiens Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Immunoglobulin G-binding protein A (protein) Protein L fragment (protein) Trastuzumab heavy chain (protein) Trastuzumab light chain (protein)

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4HKZ \| pdb_00004hkz	Download File View File

Trastuzumab Fab complexed with Protein L and Protein A fragments

Avery, K.N., Zer, C., Bzymek, K.P., Williams, J.C.

(2013) Proc Natl Acad Sci U S A 110: 17456-17461

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Finegoldia magna Homo sapiens Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Immunoglobulin G-binding protein A (protein) Protein L fragment (protein) Trastuzumab heavy chain (protein) Trastuzumab light chain (protein)
Unique Ligands	CL

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4IOI \| pdb_00004ioi	Download File View File

Meditope-enabled trastuzumab in complex with CQFDLSTRRLKC

Bzymek, K.P., Zer, C., Avery, K.N., Williams, J.C.

(2013) Proc Natl Acad Sci U S A 110: 17456-17461

Released	2013-10-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Finegoldia magna Homo sapiens Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Immunoglobulin G-binding protein A (protein) Protein L (protein) Trastuzumab heavy chain (protein) Trastuzumab light chain (protein) meditope (protein)

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4KAQ \| pdb_00004kaq	Download File View File

Structure of rituximab Fab

Bzymek, K.P., Williams, J.C.

To be published

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Rituximab heavy chain (protein) Rituximab light chain (protein)

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5ESQ \| pdb_00005esq	Download File View File

Cetuximab Fab in complex with cyclic beta-alanine-linked meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Cyclic beta-alanine-linked meditope (protein)
Unique Ligands	PO4

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5ETU \| pdb_00005etu	Download File View File

Cetuximab Fab in complex with L5E meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) L5E meditope variant (protein)
Unique Ligands	PO4

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5EUK \| pdb_00005euk	Download File View File

Cetuximab Fab in complex with F3H meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) F3H meditope (protein)
Unique Ligands	MRY, NAG, PO4

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5F88 \| pdb_00005f88	Download File View File

Cetuximab Fab in complex with L5Y meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.481 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) L5Y meditope (protein)
Unique Ligands	NAG, PO4

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5FF6 \| pdb_00005ff6	Download File View File

Cetuximab Fab in complex with L10Q meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) L10Q meditope (protein)
Unique Ligands	NAG, PO4

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5HPM \| pdb_00005hpm	Download File View File

Cetuximab Fab in complex with cyclic linked meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) N-ACETYL-L-CYSTEINE, Cyclic amidated, acetylated linked meditope (protein)
Unique Ligands	CY3, NAG

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5HYQ \| pdb_00005hyq	Download File View File

Cetuximab Fab in complex with amidated meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.477 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Amidated meditope (protein) Cetuximab heavy chain (protein) Cetuximab light chain (protein)
Unique Ligands	PO4

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5I2I \| pdb_00005i2i	Download File View File

Structure of cetuximab Fab with cyclic F3Q variant of the meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.551 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Meditope (protein)
Unique Ligands	PO4

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5ICX \| pdb_00005icx	Download File View File

Cetuximab Fab in complex with CQFDLSTRRLRCGGSK meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Meditope (protein)
Unique Ligands	NAG, PO4

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5ICY \| pdb_00005icy	Download File View File

Cetuximab Fab in complex with linear meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Meditope (protein)
Unique Ligands	PO4

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5ICZ \| pdb_00005icz	Download File View File

Cetuximab Fab in complex with GQFDLSTRRLKG peptide

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Meditope (protein)
Unique Ligands	PO4

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5ID0 \| pdb_00005id0	Download File View File

Cetuximab Fab in complex with aminoheptanoic acid-linked meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Cyclic meditope (protein)
Unique Ligands	NAG, PO4

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5ID1 \| pdb_00005id1	Download File View File

Cetuximab Fab in complex with MPT-Cys meditope

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 434-442

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Meditope (protein)
Unique Ligands	NAG, PO4

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5IOP \| pdb_00005iop	Download File View File

Cetuximab Fab in complex with 4-bromophenylalanine meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.499 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab, heavy chain (protein) Cetuximab Fab, light chain (protein) Meditope variant (protein)
Unique Ligands	PO4

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5IR1 \| pdb_00005ir1	Download File View File

Cetuximab Fab in complex with 3-bromophenylalanine meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.482 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab heavy chain (protein) Cetuximab Fab light chain (protein) Meditope variant (protein)
Unique Ligands	NAG, PO4

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5ITF \| pdb_00005itf	Download File View File

Cetuximab Fab in complex with 2-bromophenylalanine meditope variant

Bzymek, K.P., Williams, J.C.

(2016) Acta Crystallogr F Struct Biol Commun 72: 820-830

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Cetuximab Fab, heavy chain (protein) Cetuximab Fab, light chain (protein) Meditope variant (protein)
Unique Ligands	PO4

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1LOK | pdb_00001lok

2ANP | pdb_00002anp

3UEP | pdb_00003uep

4GW1 | pdb_00004gw1

4GW5 | pdb_00004gw5

4HJG | pdb_00004hjg

4HKZ | pdb_00004hkz

4IOI | pdb_00004ioi

4KAQ | pdb_00004kaq

5ESQ | pdb_00005esq

5ETU | pdb_00005etu

5EUK | pdb_00005euk

5F88 | pdb_00005f88

5FF6 | pdb_00005ff6

5HPM | pdb_00005hpm

5HYQ | pdb_00005hyq

5I2I | pdb_00005i2i

5ICX | pdb_00005icx

5ICY | pdb_00005icy

5ICZ | pdb_00005icz

5ID0 | pdb_00005id0

5ID1 | pdb_00005id1

5IOP | pdb_00005iop

5IR1 | pdb_00005ir1

5ITF | pdb_00005itf