RCSB PDB: Search

3L01 \| pdb_00003l01	Download File View File

Crystal structure of monomeric glycogen synthase from Pyrococcus abyssi

Diaz, A., Martinez-Pons, C., Fita, I., Ferrer, J.C., Guinovart, J.J.

(2011) J Biological Chem 286: 18505-18514

Released	2010-12-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrococcus abyssi
Macromolecule	GlgA glycogen synthase (protein)
Unique Ligands	CL, GOL, K
Unique branched monosaccharides	GLC

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4S0V \| pdb_00004s0v	Download File View File

Crystal structure of the human OX2 orexin receptor bound to the insomnia drug Suvorexant

Yin, J., Kolb, P., Mobarec, J.C., Rosenbaum, D.M.

(2015) Nature 519: 247-250

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Human Orexin receptor type 2 fusion protein to P. abysii Glycogen Synthase (protein)
Unique Ligands	OLA, SUV

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4ZJ8 \| pdb_00004zj8	Download File View File

Structures of the human OX1 orexin receptor bound to selective and dual antagonists

Yin, J., Brautigam, C.A., Shao, Z., Clark, L., Harrell, C.M., Gotter, A.L., Coleman, P., Renger, J.J., Rosenbaum, D.M.

(2016) Nat Struct Mol Biol 23: 293-299

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.751 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	human OX1R fusion protein to P.abysii glycogen synthase (protein)
Unique Ligands	OLA, SUV

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4ZJC \| pdb_00004zjc	Download File View File

Structures of the human OX1 orexin receptor bound to selective and dual antagonists

Yin, J., Brautigam, C.A., Shao, Z., Clark, L., Harrell, C.M., Gotter, A.L., Coleman, P.J., Renger, J.J., Rosenbaum, D.M.

(2016) Nat Struct Mol Biol 23: 293-299

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.832 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	human OX1R fusion protein to P.abysii glycogen synthase (protein)
Unique Ligands	4OT, OLA

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5U09 \| pdb_00005u09	Download File View File

High-resolution crystal structure of the human CB1 cannabinoid receptor

Shao, Z.H., Yin, J., Rosenbaum, D.

(2016) Nature

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Cannabinoid receptor 1,GlgA glycogen synthase (protein)
Unique Ligands	7DY, PEG, SO4

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5WQC \| pdb_00005wqc	Download File View File

Crystal structure of human orexin 2 receptor bound to the selective antagonist EMPA determined by the synchrotron light source at SPring-8.

Suno, R., Hirata, K., Yamashita, K., Tsujimoto, H., Sasanuma, M., Horita, S., Yamamoto, M., Rosenbaum, D.M., Iwata, S., Shimamura, T., Kobayashi, T.

(2018) Structure 26: 7-19.e5

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Orexin receptor type 2,GlgA glycogen synthase,Orexin receptor type 2 (protein)
Unique Ligands	1PE, 7MA, OLA

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5WS3 \| pdb_00005ws3	Download File View File

Crystal structures of human orexin 2 receptor bound to the selective antagonist EMPA determined by serial femtosecond crystallography at SACLA

Suno, R., Kimura, K., Nakane, T., Yamashita, K., Wang, J., Fujiwara, T., Yamanaka, Y., Im, D., Tsujimoto, H., Sasanuma, M., Horita, S., Hirokawa, T., Nango, E., Tono, K., Kameshima, T., Hatsui, T., Joti, Y., Yabashi, M., Shimamoto, K., Yamamoto, M., Rosenbaum, D.M., Iwata, S., Shimamura, T., Kobayashi, T.

(2018) Structure 26: 7-19.e5

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Orexin receptor type 2,GlgA glycogen synthase,Orexin receptor type 2 (protein)
Unique Ligands	1PE, 7MA, OLA

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6E59 \| pdb_00006e59	Download File View File

Crystal structure of the human NK1 tachykinin receptor

Yin, J., Clark, L., Chapman, K., Shao, Z., Borek, D., Xu, Q., Wang, J., Rosenbaum, D.M.

(2018) Proc Natl Acad Sci U S A 115: 13264-13269

Released	2018-12-12
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Substance-P receptor, GlgA glycogen synthase, Substance-P receptor chimera (protein)
Unique Ligands	L76

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6FJ3 \| pdb_00006fj3	Download File View File

High resolution crystal structure of parathyroid hormone 1 receptor in complex with a peptide agonist.

Ehrenmann, J., Schoppe, J., Klenk, C., Rappas, M., Kummer, L., Dore, A.S., Pluckthun, A.

(2018) Nat Struct Mol Biol 25: 1086-1092

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Equus caballus Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Parathyroid hormone (protein) Parathyroid hormone/parathyroid hormone-related peptide receptor,Parathyroid hormone/parathyroid hormone-related peptide receptor,GlgA glycogen synthase,Parathyroid hormone/parathyroid hormone-related peptide receptor (protein)
Unique Ligands	ACY, CL, MAN, OLA, PG4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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6HLL \| pdb_00006hll	Download File View File

Crystal structure of the Neurokinin 1 receptor in complex with the small molecule antagonist CP-99,994

Schoppe, J., Ehrenmann, J., Klenk, C., Rucktooa, P., Schutz, M., Dore, A.S., Pluckthun, A.

(2019) Nat Commun 10: 17-17

Released	2019-01-16
Method	X-RAY DIFFRACTION 3.27 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Substance-P receptor,GlgA glycogen synthase,Substance-P receptor (protein)
Unique Ligands	GBK

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6HLO \| pdb_00006hlo	Download File View File

Crystal structure of the Neurokinin 1 receptor in complex with the small molecule antagonist Aprepitant

Schoppe, J., Ehrenmann, J., Klenk, C., Rucktooa, P., Schutz, M., Dore, A.S., Pluckthun, A.

(2019) Nat Commun 10: 17-17

Released	2019-01-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Substance-P receptor,GlgA glycogen synthase,Substance-P receptor (protein)
Unique Ligands	CIT, GBQ, OLA, OLC

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6KP6 \| pdb_00006kp6	Download File View File

The structural study of mutation induced inactivation of Human muscarinic receptor M4

Wang, J.J., Wu, M., Wu, L.J., Liu, Z.J., Hua, T.

(2020) IUCrJ 7: 294-305

Released	2020-03-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Muscarinic acetylcholine receptor M4,GlgA glycogen synthase,Muscarinic acetylcholine receptor M4 (protein)

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6KQI \| pdb_00006kqi	Download File View File

Structure of an allosteric modulator bound to the CB1 cannabinoid receptor

Shao, Z.H., Yan, W.

(2019) Nat Chem Biol 15: 1199-1205

Released	2019-10-23
Method	X-RAY DIFFRACTION 3.245 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Cannabinoid receptor 1,GlgA glycogen synthase,Cannabinoid receptor 1 (protein)
Unique Ligands	9GF, 9GL, OLA, OLC, PEG

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6LFL \| pdb_00006lfl	Download File View File

Crystal structure of a class A GPCR

Liu, Z.J., Hua, T., Liu, K.W., Wu, L.J.

(2020) Nature 585: 135-140

Released	2020-09-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	C-X-C chemokine receptor type 2,GlgA glycogen synthase,C-X-C chemokine receptor type 2 (protein)
Unique Ligands	EBX

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6ME2 \| pdb_00006me2	Download File View File

XFEL crystal structure of human melatonin receptor MT1 in complex with ramelteon

Stauch, B., Johansson, L.C., McCorvy, J.D., Patel, N., Han, G.W., Gati, C., Batyuk, A., Ishchenko, A., Brehm, W., White, T.A., Michaelian, N., Madsen, C., Zhu, L., Grant, T.D., Grandner, J.M., Olsen, R.H.J., Tribo, A.R., Weierstall, U., Roth, B.L., Katritch, V., Liu, W., Cherezov, V.

(2019) Nature 569: 284-288

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase (protein)
Unique Ligands	JEV, OLA, PEG

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6ME3 \| pdb_00006me3	Download File View File

XFEL crystal structure of human melatonin receptor MT1 in complex with 2-phenylmelatonin

Stauch, B., Johansson, L.C., McCorvy, J.D., Patel, N., Han, G.W., Gati, C., Batyuk, A., Ishchenko, A., Brehm, W., White, T.A., Michaelian, N., Madsen, C., Zhu, L., Grant, T.D., Grandner, J.M., Olsen, R.H.J., Tribo, A.R., Weierstall, U., Roth, B.L., Katritch, V., Liu, W., Cherezov, V.

(2019) Nature 569: 284-288

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase (protein)
Unique Ligands	JEY, OLA, PEG

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6ME4 \| pdb_00006me4	Download File View File

XFEL crystal structure of human melatonin receptor MT1 in complex with 2-iodomelatonin

Stauch, B., Johansson, L.C., McCorvy, J.D., Patel, N., Han, G.W., Gati, C., Batyuk, A., Ishchenko, A., Brehm, W., White, T.A., Michaelian, N., Madsen, C., Zhu, L., Grant, T.D., Grandner, J.M., Olsen, R.H.J., Tribo, A.R., Weierstall, U., Roth, B.L., Katritch, V., Liu, W., Cherezov, V.

(2019) Nature 569: 284-288

Released	2019-04-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase (protein)
Unique Ligands	GOL, ML2, PEG

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6ME5 \| pdb_00006me5	Download File View File

XFEL crystal structure of human melatonin receptor MT1 in complex with agomelatine

Stauch, B., Johansson, L.C., McCorvy, J.D., Patel, N., Han, G.W., Gati, C., Batyuk, A., Ishchenko, A., Brehm, W., White, T.A., Michaelian, N., Madsen, C., Zhu, L., Grant, T.D., Grandner, J.M., Olsen, R.H.J., Tribo, A.R., Weierstall, U., Roth, B.L., Katritch, V., Liu, W., Cherezov, V.

(2019) Nature 569: 284-288

Released	2019-04-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase (protein)
Unique Ligands	AWY, OLA

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6PS8 \| pdb_00006ps8	Download File View File

XFEL MT1R structure by ligand exchange from agomelatine to 2-phenylmelatonin.

Ishchenko, A., Stauch, B., Han, G.W., Batyuk, A., Shiriaeva, A., Li, C., Zatsepin, N.A., Weierstall, U., Liu, W., Nango, E., Nakane, T., Tanaka, R., Tono, K., Joti, Y., Iwata, S., Moraes, I., Gati, C., Cherezov, C.

(2019) IUCrJ 6: 1106-1119

Released	2019-11-13
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Fusion protein of Melatonin receptor type 1A and GlgA glycogen synthase (protein)
Unique Ligands	JEY

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6TPG \| pdb_00006tpg	Download File View File

Crystal structure of the Orexin-2 receptor in complex with EMPA at 2.74 A resolution

Rappas, M., Ali, A., Bennett, K.A., Brown, J.D., Bucknell, S.J., Congreve, M., Cooke, R.M., Cseke, G., de Graaf, C., Dore, A.S., Errey, J.C., Jazayeri, A., Marshall, F.H., Mason, J.S., Mould, R., Patel, J.C., Tehan, B.G., Weir, M., Christopher, J.A.

(2020) J Med Chem 63: 1528-1543

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.741 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Orexin receptor type 2,GlgA glycogen synthase,Hypocretin receptor-2 (protein)
Unique Ligands	7MA, OLA, PG4

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6TPJ \| pdb_00006tpj	Download File View File

Crystal structure of the Orexin-2 receptor in complex with suvorexant at 2.76 A resolution

Rappas, M., Ali, A., Bennett, K.A., Brown, J.D., Bucknell, S.J., Congreve, M., Cooke, R.M., Cseke, G., de Graaf, C., Dore, A.S., Errey, J.C., Jazayeri, A., Marshall, F.H., Mason, J.S., Mould, R., Patel, J.C., Tehan, B.G., Weir, M., Christopher, J.A.

(2020) J Med Chem 63: 1528-1543

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Orexin receptor type 2,GlgA glycogen synthase,Hypocretin receptor-2 (protein)
Unique Ligands	NH4, OLA, PG4, SUV

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6TPN \| pdb_00006tpn	Download File View File

Crystal structure of the Orexin-2 receptor in complex with HTL6641 at 2.61 A resolution

Rappas, M., Ali, A., Bennett, K.A., Brown, J.D., Bucknell, S.J., Congreve, M., Cooke, R.M., Cseke, G., de Graaf, C., Dore, A.S., Errey, J.C., Jazayeri, A., Marshall, F.H., Mason, J.S., Mould, R., Patel, J.C., Tehan, B.G., Weir, M., Christopher, J.A.

(2020) J Med Chem 63: 1528-1543

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.608 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Orexin receptor type 2,GlgA glycogen synthase,Orexin receptor type 2 (protein)
Unique Ligands	NO3, NU8, OLA, PG4

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6V9S \| pdb_00006v9s	Download File View File

Structure-based development of subtype-selective orexin 1 receptor antagonists

Hellmann, J., Drabek, M., Yin, J., Huebner, H., Kraus, F., Proell, T., Weikert, D., Kolb, P., Rosenbaum, D.M., Gmeiner, P.

(2020) Proc Natl Acad Sci U S A 117: 18059-18067

Released	2020-07-15
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Orexin receptor type 1,GlgA glycogen synthase chimera (protein)
Unique Ligands	CLR, JHC, OLA

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6W25 \| pdb_00006w25	Download File View File

Crystal structure of the Melanocortin-4 Receptor (MC4R) in complex with SHU9119

Yu, J., Gimenez, L.E., Hernandez, C.C., Wu, Y., Wein, A.H., Han, G.W., McClary, K., Mittal, S.R., Burdsall, K., Stauch, B., Wu, L., Stevens, S.N., Peisley, A., Williams, S.Y., Chen, V., Millhauser, G.L., Zhao, S., Cone, R.D., Stevens, R.C.

(2020) Science 368: 428-433

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5 synthetic construct
Macromolecule	Melanocortin receptor 4,GlgA glycogen synthase,Melanocortin receptor 4 (protein) SHU9119 (protein)
Unique Ligands	CA, OLA

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7BR3 \| pdb_00007br3	Download File View File

Crystal structure of the protein 1

Cheng, L., Shao, Z.

(2020) Nat Commun 11: 5287-5287

Released	2020-10-07
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Homo sapiens Pyrococcus abyssi GE5
Macromolecule	Gonadotropin-releasing hormone receptor,GlgA glycogen synthase,Gonadotropin-releasing hormone receptor (protein)
Unique Ligands	1QW, F5O, FMT, OLC, PEG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

3L01 | pdb_00003l01

4S0V | pdb_00004s0v

4ZJ8 | pdb_00004zj8

4ZJC | pdb_00004zjc

5U09 | pdb_00005u09

5WQC | pdb_00005wqc

5WS3 | pdb_00005ws3

6E59 | pdb_00006e59

6FJ3 | pdb_00006fj3

6HLL | pdb_00006hll

6HLO | pdb_00006hlo

6KP6 | pdb_00006kp6

6KQI | pdb_00006kqi

6LFL | pdb_00006lfl

6ME2 | pdb_00006me2

6ME3 | pdb_00006me3

6ME4 | pdb_00006me4

6ME5 | pdb_00006me5

6PS8 | pdb_00006ps8

6TPG | pdb_00006tpg

6TPJ | pdb_00006tpj

6TPN | pdb_00006tpn

6V9S | pdb_00006v9s

6W25 | pdb_00006w25

7BR3 | pdb_00007br3