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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Bandaranayake, A.D."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Escherichia coli K-12 (15)
	Escherichia coli (6)
	Thermus thermophilus HB8 (3)
	Actinobacillus succinogenes (2)
	Anaerobiospirillum succiniciproducens (2)
	Trypanosoma cruzi (1)

Taxonomy

	Bacteria (28)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (29)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (15)
	2.0 - 2.5 (11)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (5)
	2005 - 2009 (10)
	2015 - 2019 (11)

Enzyme Classification Name

Lyases (29)

Symmetry Type

	Asymmetric (28)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a/b) (28)
	Artifacts (5)

AllSelected

1 to 25 of 29 Structures

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1AQ2 \| pdb_00001aq2	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Tari, L.W., Matte, A., Goldie, H., Delbaere, L.T.J.

(1997) Nat Struct Biol 4: 990-994

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ATP, MG, MN, PYR

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1AYL \| pdb_00001ayl	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Tari, L.W., Pugazenthi, U., Goldie, H., Delbaere, L.T.J.

(1996) Nat Struct Biol 3: 355-363

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ATP, MG, OXL

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1II2 \| pdb_00001ii2	Download File View File

Crystal Structure of Phosphoenolpyruvate Carboxykinase (PEPCK) from Trypanosoma cruzi

Trapani, S., Linss, J., Goldenberg, S., Fischer, H., Craievich, A.F., Oliva, G.

(2001) J Mol Biology 313: 1059-1072

Released	2001-11-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma cruzi
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	SO4

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1J3B \| pdb_00001j3b	Download File View File

Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8

Sugahara, M., Miyano, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr D Biol Crystallogr 61: 1500-1507

Released	2003-02-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ATP-dependent phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	CA, GOL, PO4

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1K3C \| pdb_00001k3c	Download File View File

Phosphoenolpyruvate carboxykinase in complex with ADP, AlF3 and Pyruvate

Sudom, A.M., Prasad, L., Goldie, H., Delbaere, L.T.J.

(2001) J Mol Biology 314: 83-92

Released	2001-12-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ADP, AF3, MG, PYR

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1K3D \| pdb_00001k3d	Download File View File

Phosphoenolpyruvate carboxykinase in complex with ADP and AlF3

Sudom, A.M., Prasad, L., Goldie, H., Delbaere, L.T.J.

(2001) J Mol Biology 314: 83-92

Released	2001-12-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ADP, AF3, MG

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1OEN \| pdb_00001oen	Download File View File

PHOSPHOENOLPYRUVATE CARBOXYKINASE

Matte, A., Goldie, H., Sweet, R.M., Delbaere, L.T.J.

(1996) J Mol Biology 256: 126-143

Released	1996-11-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PHOSPHOENOLPYRUVATE CARBOXYKINASE (protein)
Unique Ligands	ACT

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1OS1 \| pdb_00001os1	Download File View File

Structure of Phosphoenolpyruvate Carboxykinase complexed with ATP,Mg, Ca and pyruvate.

Sudom, A., Walters, R., Pastushok, L., Goldie, D., Prasad, L., Delbaere, L.T., Goldie, H.

(2003) J Bacteriol 185: 4233-4242

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase [ATP] (protein)
Unique Ligands	ATP, CA, MG, PYR

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1XKV \| pdb_00001xkv	Download File View File

Crystal Structure Of ATP-Dependent Phosphoenolpyruvate Carboxykinase From Thermus thermophilus HB8

Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr D Biol Crystallogr 61: 1500-1507

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ATP-dependent phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ATP, CA, GOL, PO4

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1YGG \| pdb_00001ygg	Download File View File

Crystal structure of phosphoenolpyruvate carboxykinase from Actinobacillus succinogenes

Leduc, Y.A., Prasad, L., Laivenieks, M., Zeikus, J.G., Delbaere, L.T.

(2005) Acta Crystallogr D Biol Crystallogr 61: 903-912

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Actinobacillus succinogenes
Macromolecule	phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	NA, SO4

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1YLH \| pdb_00001ylh	Download File View File

Crystal Structure of Phosphoenolpyruvate Carboxykinase from Actinobaccilus succinogenes in Complex with Manganese and Pyruvate

Leduc, Y.A., Prasad, L., Laivenieks, M., Zeikus, J.G., Delbaere, L.T.

(2005) Acta Crystallogr D Biol Crystallogr 61: 903-912

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Actinobacillus succinogenes
Macromolecule	phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	BME, DT3, FMT, MN, PO4, PYR

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1YTM \| pdb_00001ytm	Download File View File

Crystal structure of phosphoenolpyruvate carboxykinase of Anaerobiospirillum succiniciproducens complexed with ATP, oxalate, magnesium and manganese ions

Delbaere, L.T.J., Cotelesage, J.J.H.

(2005) Int J Biochem Cell Biol 37: 1829-1837

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Anaerobiospirillum succiniciproducens
Macromolecule	phosphoenolpyruvate carboxykinase [ATP] (protein)
Unique Ligands	ATP, MG, MN, OXD

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1YVY \| pdb_00001yvy	Download File View File

Crystal structure of Anaerobiospirillum succiniciproducens phosphoenolpyruvate carboxykinase

Cotelesage, J.J., Prasad, L., Zeikus, J.G., Laivenieks, M., Delbaere, L.T.

(2005) Int J Biochem Cell Biol 37: 1829-1837

Released	2005-07-26
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Anaerobiospirillum succiniciproducens
Macromolecule	Phosphoenolpyruvate carboxykinase [ATP] (protein)

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2OLQ \| pdb_00002olq	Download File View File

How Does an Enzyme Recognize CO2?

Puttick, J., Goldie, H., Cotelesage, J.J., Rajabi, B., Novakovski, B., Delbaere, L.T.

(2007) Int J Biochem Cell Biol 39: 1204-1210

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ATP, CO2, MG, MN

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2OLR \| pdb_00002olr	Download File View File

Crystal structure of Escherichia coli phosphoenolpyruvate carboxykinase complexed with carbon dioxide, Mg2+, ATP

Cotelesage, J.J., Delbaere, L.T., Goldie, H., Puttick, J., Rajabi, B., Novakovski, B.

(2007) Int J Biochem Cell Biol 39: 1204-1210

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ATP, CL, CO2, MG

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2PC9 \| pdb_00002pc9	Download File View File

Crystal Structure Of ATP-Dependent Phosphoenolpyruvate Carboxykinase From Thermus thermophilus HB8

Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Phosphoenolpyruvate carboxykinase [ATP] (protein)
Unique Ligands	ATP, CA, PO4

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2PXZ \| pdb_00002pxz	Download File View File

E. coli phosphoenolpyruvate carboxykinase (PEPCK) complexed with ATP, Mg2+, Mn2+, carbon dioxide and oxaloacetate

Delbaere, L.T.J., Cotelesage, J.J.H., Goldie, H.

To be published

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ATP, CO2, MG, MN, OAA

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2PY7 \| pdb_00002py7	Download File View File

Crystal structure of E. coli phosphoenolpyruvate carboxykinase mutant Lys213Ser complexed with ATP-Mg2+-Mn2+

Delbaere, L.T.J., Cotelesage, J.J.H., Goldie, H.

To be published

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (protein)
Unique Ligands	ATP, MG, MN

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6ASI \| pdb_00006asi	Download File View File

E. coli phosphoenolpyruvate carboxykinase G209S mutant bound to methanesulfonate

Tang, H.Y.H., Shin, D.S., Tainer, J.A.

(2018) Biochemistry 57: 6688-6700

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.789 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	03S, ATP, MG, MN

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6ASM \| pdb_00006asm	Download File View File

E. coli phosphoenolpyruvate carboxykinase G209S K212C mutant bound to thiosulfate

Tang, H.Y.H., Shin, D.S., Tainer, J.A.

(2018) Biochemistry 57: 6688-6700

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	ATP, BTB, MG, MN, THJ, XE

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6ASN \| pdb_00006asn	Download File View File

E. coli phosphoenolpyruvate carboxykinase K212I F216V mutant bound to methanesulfonate

Tang, H.Y.H., Shin, D.S., Tainer, J.A.

(2018) Biochemistry 57: 6688-6700

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.549 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	03S, SO4

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6AT2 \| pdb_00006at2	Download File View File

E. coli phosphoenolpyruvate carboxykinase G209N mutant bound to thiosulfate

Tang, H.Y.H., Shin, D.S., Tainer, J.A.

(2018) Biochemistry 57: 6688-6700

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.444 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	ATP, MG, MN, THJ, TRS

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6AT3 \| pdb_00006at3	Download File View File

E. coli phosphoenolpyruvate carboxykinase Y207F mutant bound to thiosulfate and oxaloacetate

Tang, H.Y.H., Shin, D.S., Tainer, J.A.

(2018) Biochemistry 57: 6688-6700

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.455 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	OAA, THJ

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6AT4 \| pdb_00006at4	Download File View File

E. coli phosphoenolpyruvate carboxykinase bound to thiosulfate

Tang, H.Y.H., Shin, D.S., Tainer, J.A.

(2018) Biochemistry 57: 6688-6700

Released	2018-08-29
Method	X-RAY DIFFRACTION 1.332 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	THJ

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6COM \| pdb_00006com	Download File View File

2.3A crystal structure of E. coli phosphoenolpyruvate carboxykinase mutant Asp269Asn

Sokaribo, A.S., Cotelesage, J.H., Novakovski, B., Goldie, H., Sanders, D.

(2020) Biochim Biophys Acta Gen Subj 1864: 129517-129517

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Phosphoenolpyruvate carboxykinase (ATP) (protein)
Unique Ligands	ATP, CA, MG, PYR

1 to 25 of 29 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AQ2 | pdb_00001aq2

1AYL | pdb_00001ayl

1II2 | pdb_00001ii2

1J3B | pdb_00001j3b

1K3C | pdb_00001k3c

1K3D | pdb_00001k3d

1OEN | pdb_00001oen

1OS1 | pdb_00001os1

1XKV | pdb_00001xkv

1YGG | pdb_00001ygg

1YLH | pdb_00001ylh

1YTM | pdb_00001ytm

1YVY | pdb_00001yvy

2OLQ | pdb_00002olq

2OLR | pdb_00002olr

2PC9 | pdb_00002pc9

2PXZ | pdb_00002pxz

2PY7 | pdb_00002py7

6ASI | pdb_00006asi

6ASM | pdb_00006asm

6ASN | pdb_00006asn

6AT2 | pdb_00006at2

6AT3 | pdb_00006at3

6AT4 | pdb_00006at4

6COM | pdb_00006com