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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ames, J.B."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (10)
	Bos taurus (6)
	Mus musculus (4)
	Xenopus laevis (4)
	Danio rerio (2)
	Nostoc punctiforme PCC 73102 (2)
	Oryctolagus cuniculus (1)
	Pasteurella multocida (1)
	Saccharomyces cerevisiae (1)
	Trypanosoma cruzi (1)

More...

Taxonomy

	Eukaryota (24)
	Bacteria (4)

Experimental Method

	SOLUTION NMR (25)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (2)
	2005 - 2009 (4)
	2010 - 2014 (4)
	2015 - 2019 (9)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (3)
	Lyases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

Asymmetric (28)

SCOP Classification

	All alpha proteins (13)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 28 Structures

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1FPW \| pdb_00001fpw	Download File View File

STRUCTURE OF YEAST FREQUENIN

Ames, J.B., Hendricks, K.B., Strahl, T., Huttner, I.G., Thorner, J.

(2000) Biochemistry 39: 12149-12161

Released	2000-10-18
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	CALCIUM-BINDING PROTEIN NCS-1 (protein)
Unique Ligands	CA

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1IKU \| pdb_00001iku	Download File View File

myristoylated recoverin in the calcium-free state, NMR, 22 structures

Tanaka, T., Ames, J.B., Harvey, T.S., Stryer, L., Ikura, M.

(1995) Nature 376: 444-447

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	RECOVERIN (protein)
Unique Ligands	MYR

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1JBA \| pdb_00001jba	Download File View File

UNMYRISTOYLATED GCAP-2 WITH THREE CALCIUM IONS BOUND

Ames, J.B., Dizhoor, A.M., Ikura, M., Palczewski, K., Stryer, L.

(1999) J Biological Chem 274: 19329-19337

Released	1999-12-10
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	PROTEIN (GUANYLATE CYCLASE ACTIVATING PROTEIN 2) (protein)
Unique Ligands	CA

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1JSA \| pdb_00001jsa	Download File View File

MYRISTOYLATED RECOVERIN WITH TWO CALCIUMS BOUND, NMR, 24 STRUCTURES

Ames, J.B., Ishima, R., Tanaka, T., Gordon, J.I., Stryer, L., Ikura, M.

(1997) Nature 389: 198-202

Released	1997-10-15
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	RECOVERIN (protein)
Unique Ligands	CA, MYR

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1LA3 \| pdb_00001la3	Download File View File

Solution structure of recoverin mutant, E85Q

Ames, J.B., Hamasaki, N., Molchanova, T.

(2002) Biochemistry 41: 5776-5787

Released	2002-06-19
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Recoverin (protein)
Unique Ligands	CA, MYR

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1Z2K \| pdb_00001z2k	Download File View File

NMR structure of the D1 domain of the Natural Killer Cell Receptor, 2B4

Ames, J.B., Vyas, V., Lusin, J.D., Mariuzza, R.

(2005) Biochemistry 44: 6416-6423

Released	2005-05-03
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Natural killer cell receptor 2B4 (protein)

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2FM4 \| pdb_00002fm4	Download File View File

NMR structure of the phosphoryl carrier domain of pyruvate phosphate dikinase

Ames, J.B.

(2006) Biochemistry 45: 1702-1711

Released	2006-10-03
Method	SOLUTION NMR
Organisms	[Clostridium] symbiosum
Macromolecule	Pyruvate, phosphate dikinase (protein)

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2I94 \| pdb_00002i94	Download File View File

NMR Structure of recoverin bound to rhodopsin kinase

Ames, J.B.

(2006) J Biological Chem 281: 37237-37245

Released	2006-10-10
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Recoverin (protein) Rhodopsin kinase (protein)
Unique Ligands	CA

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2M28 \| pdb_00002m28	Download File View File

NMR structure of Ca2+ bound CaBP4 C-domain

Ames, J.B.

To be published

Released	2014-05-07
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Calcium-binding protein 4 (protein)
Unique Ligands	CA

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2M29 \| pdb_00002m29	Download File View File

NMR structure of Ca2+ bound CaBP4 N-domain

Ames, J.B.

To be published

Released	2014-05-07
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Calcium-binding protein 4 (protein)
Unique Ligands	CA

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2MES \| pdb_00002mes	Download File View File

Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide

Zhang, Y., Ames, J.B.

(2014) EMBO J 33: 1341-1353

Released	2014-12-24
Method	SOLUTION NMR
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Calmodulin (protein) Disks large homolog 4 (protein)
Unique Ligands	CA

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2NA0 \| pdb_00002na0	Download File View File

NMR structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) mutant V77E in a Ca2+-free/Mg2+-bound Activator State

Lim, S., Ames, J.B.

(2016) J Biological Chem 291: 4429-4441

Released	2015-12-30
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Guanylyl cyclase-activating protein 1 (protein)

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3CS1 \| pdb_00003cs1	Download File View File

Flagellar Calcium-binding Protein (FCaBP) from T. cruzi

Ames, J.B., Ladner, J.E., Wingard, J.N., Robinson, H., Fisher, A.

(2008) J Biological Chem 283: 23388-23396

Released	2008-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma cruzi
Macromolecule	Flagellar calcium-binding protein (protein)

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3S44 \| pdb_00003s44	Download File View File

Crystal Structure of Pasteurella multocida sialyltransferase M144D mutant with CMP bound

Sugiarto, G., Lau, K., Li, Y., Lim, S., Ames, J.B., Le, D.-T., Fisher, A.J., Chen, X.

(2012) ACS Chem Biol 7: 1232-1240

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pasteurella multocida
Macromolecule	Alpha-2,3/2,6-sialyltransferase/sialidase (protein)
Unique Ligands	FN5

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5J7J \| pdb_00005j7j	Download File View File

NMR Derived Structure of Ca2+ Calmodulin bound to Phosphorylated PSD-95

Turner, M.L., Ames, J.B., Anderson, D.E.

(2018) EMBO J 37: 122-138

Released	2017-10-25
Method	SOLUTION NMR
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Calmodulin (protein) Disks large homolog 4 (protein)
Unique Ligands	CA

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5T0X \| pdb_00005t0x	Download File View File

Solution NMR-derived structure of calmodulin bound with ER alpha peptides

Zhang, Y., Ames, J.B.

To be published

Released	2017-02-15
Method	SOLUTION NMR
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Calmodulin (protein) Estrogen receptor peptide (protein)
Unique Ligands	CA

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5T7C \| pdb_00005t7c	Download File View File

Solution structure of calcium free, myristoylated visinin-like protein 3

Lim, S., Ames, J.B.

(2016) PLoS One 11: e0165921-e0165921

Released	2017-07-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Hippocalcin-like protein 1 (protein)

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6BHN \| pdb_00006bhn	Download File View File

Red Light-Absorbing State of NpR6012g4, a Red/Green Cyanobacteriochrome

Yu, Q., Lim, S., Rockwell, N.C., Martin, S.S., Lagarias, J.C., Ames, J.B.

(2018) Proc Natl Acad Sci U S A 115: 4387-4392

Released	2018-04-18
Method	SOLUTION NMR
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	Methyl-accepting chemotaxis sensory transducer with phytochrome sensor (protein)
Unique Ligands	CYC

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6BHO \| pdb_00006bho	Download File View File

Green Light-Absorbing State of NpR6012g4, a Red/Green Cyanobacteriochrome

Lim, S., Yu, Q., Rockwell, N.C., Martin, S.S., Lagarias, J.C., Ames, J.B.

(2018) Proc Natl Acad Sci U S A 115: 4387-4392

Released	2018-04-18
Method	SOLUTION NMR
Organisms	Nostoc punctiforme PCC 73102
Macromolecule	Methyl-accepting chemotaxis sensory transducer with phytochrome sensor (protein)
Unique Ligands	CYC

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6C0A \| pdb_00006c0a	Download File View File

Actinin-1 EF-Hand bound to the Cav1.2 IQ Motif

Turner, M.L., Ames, J.B.

To be published

Released	2019-01-16
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	Alpha-actinin-1 (protein) Voltage-dependent L-type calcium channel subunit alpha-1C (protein)

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6CTB \| pdb_00006ctb	Download File View File

Apo-Calmodulin Bound to Calcium Voltage Gated Channel 1.2 IQ-Motif

Turner, M.L., Anderson, D.E., Ames, J.B.

To be published

Released	2019-09-25
Method	SOLUTION NMR
Organisms	Oryctolagus cuniculus Xenopus laevis
Macromolecule	Calmodulin-1 (protein) Voltage-dependent L-type calcium channel subunit alpha-1C (protein)

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6DRF \| pdb_00006drf	Download File View File

Structure of human Retinal Degeneration 3(RD3) Protein

Yu, Q., Lim, S., Peshenko, I., Cudia, D., Dizhoor, A.M., Ames, J.B.

(2019) J Biological Chem 294: 2318-2328

Released	2019-02-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein RD3 (protein)

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7KL5 \| pdb_00007kl5	Download File View File

Structure of Calmodulin Bound to the Cardiac Ryanodine Receptor (RyR2) at Residues: Phe4246 to Val4271

Fisher, A.J., Ames, J.B., Yu, Q.

(2021) Biochemistry 60: 1088-1096

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Ryanodine receptor 2 (protein)
Unique Ligands	CA, EDO

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7L8V \| pdb_00007l8v	Download File View File

NMR Structure of half-calcified calmodulin mutant (CaMEF12) bound to the IQ-motif of CaV1.2

Ames, J.B.

(2022) J Biological Chem 298: 102701-102701

Released	2022-07-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Voltage-dependent L-type calcium channel subunit alpha-1C (protein)
Unique Ligands	CA