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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Alvarez-Cabrera, A.L."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Trypanosoma brucei (6)
	Homo sapiens (3)
	Human immunodeficiency virus 1 (3)
	Escherichia coli (2)
	Human herpesvirus 6 strain Z29 (1)
	Macaca mulatta (1)

Taxonomy

	Eukaryota (9)
	Riboviria (3)
	Bacteria (2)
	Duplodnaviria (1)

Experimental Method

ELECTRON MICROSCOPY (10)

Polymer Entity Type

	Protein (10)
	RNA (7)

Refinement Resolution (Å)

	3.0 - 3.5 (3)
	3.5 - 4.0 (6)
	> 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (9)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (1)
	Icosahedral (1)

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1 to 10 of 10 Structures

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6Q1F \| pdb_00006q1f	Download File View File

Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes

Zhang, Y.B., Liu, W., Li, Z.H., Kumar, V., Alvarez-Cabrera, A.L., Leibovitch, E., Cui, Y.X., Mei, Y., Bi, G.Q., Jacobson, S., Zhou, Z.H.

(2019) Nat Commun 10: 5346-5346

Released	2019-12-11
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Human herpesvirus 6 strain Z29
Macromolecule	Large structural phosphoprotein (protein) Major capsid protein (protein) Small capsomere-interacting protein (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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8E40 \| pdb_00008e40	Download File View File

Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA

Ito, F., Alvarez-Cabrera, A.L., Liu, S., Yang, H., Shiriaeva, A., Zhou, Z.H., Chen, X.S.

(2023) Sci Adv 9: eade3168-eade3168

Released	2023-01-11
Method	ELECTRON MICROSCOPY 3.57 Å
Organisms	Escherichia coli Homo sapiens Human immunodeficiency virus 1 Macaca mulatta
Macromolecule	Core-binding factor subunit beta (protein) DNA dC->dU-editing enzyme APOBEC-3G (protein) Virion infectivity factor (protein) RNA (nucleic acid)
Unique Ligands	ZN

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8FN4 \| pdb_00008fn4	Download File View File

Cryo-EM structure of RNase-treated RESC-A in trypanosomal RNA editing

Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Trypanosoma brucei
Macromolecule	Unique protein chains: 6

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8FN6 \| pdb_00008fn6	Download File View File

Cryo-EM structure of RNase-untreated RESC-A in trypanosomal RNA editing

Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Trypanosoma brucei
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 1
Unique Ligands	ATP

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8FNC \| pdb_00008fnc	Download File View File

Cryo-EM structure of RNase-treated RESC-C in trypanosomal RNA editing

Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Trypanosoma brucei
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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8FNF \| pdb_00008fnf	Download File View File

Cryo-EM structure of RNase-untreated RESC-C in trypanosomal RNA editing

Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Trypanosoma brucei
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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8FNI \| pdb_00008fni	Download File View File

Cryo-EM structure of RNase-treated RESC-B in trypanosomal RNA editing

Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Trypanosoma brucei
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2

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8FNK \| pdb_00008fnk	Download File View File

Cryo-EM structure of RNase-untreated RESC-B in trypanosomal RNA editing

Liu, S., Wang, H., Li, X., Zhang, F., Lee, J.K.J., Li, Z., Yu, C., Zhao, X., Hu, J.J., Suematsu, T., Alvarez-Cabrera, A.L., Liu, Q., Zhang, L., Huang, L., Aphasizheva, I., Aphasizhev, R., Zhou, Z.H.

(2023) Science 381: eadg4725-eadg4725

Released	2023-07-19
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Trypanosoma brucei
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2

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8FVI \| pdb_00008fvi	Download File View File

Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5

Ito, F., Alvarez-Cabrera, A.L., Zhou, Z.H., Chen, X.S.

(2023) Nat Commun 14: 5241-5241

Released	2023-09-06
Method	ELECTRON MICROSCOPY 3.24 Å
Organisms	Escherichia coli Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ZN

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8FVJ \| pdb_00008fvj	Download File View File

Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5

Ito, F., Alvarez-Cabrera, A.L., Zhou, Z.H., Chen, X.S.

(2023) Nat Commun 14: 5241-5241

Released	2023-09-06
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Core-binding factor subunit beta (protein) Cullin-5 (protein) Elongin-B (protein) Elongin-C (protein) Virion infectivity factor (protein)
Unique Ligands	ZN

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6Q1F | pdb_00006q1f

Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes

8E40 | pdb_00008e40

Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA

8FN4 | pdb_00008fn4

Cryo-EM structure of RNase-treated RESC-A in trypanosomal RNA editing

8FN6 | pdb_00008fn6

Cryo-EM structure of RNase-untreated RESC-A in trypanosomal RNA editing

8FNC | pdb_00008fnc

Cryo-EM structure of RNase-treated RESC-C in trypanosomal RNA editing

8FNF | pdb_00008fnf

Cryo-EM structure of RNase-untreated RESC-C in trypanosomal RNA editing

8FNI | pdb_00008fni

Cryo-EM structure of RNase-treated RESC-B in trypanosomal RNA editing

8FNK | pdb_00008fnk

Cryo-EM structure of RNase-untreated RESC-B in trypanosomal RNA editing

8FVI | pdb_00008fvi

Human APOBEC3H bound to HIV-1 Vif in complex with CBF-beta, ELOB, ELOC, and CUL5

8FVJ | pdb_00008fvj

Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6Q1F | pdb_00006q1f

8E40 | pdb_00008e40

8FN4 | pdb_00008fn4

8FN6 | pdb_00008fn6

8FNC | pdb_00008fnc

8FNF | pdb_00008fnf

8FNI | pdb_00008fni

8FNK | pdb_00008fnk

8FVI | pdb_00008fvi

8FVJ | pdb_00008fvj