RCSB PDB: Search

5PHO \| pdb_00005pho	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 1)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHP \| pdb_00005php	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 2)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHQ \| pdb_00005phq	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 3)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHR \| pdb_00005phr	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 4)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHS \| pdb_00005phs	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 5)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHT \| pdb_00005pht	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 6)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHU \| pdb_00005phu	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 7)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHV \| pdb_00005phv	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 8)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHW \| pdb_00005phw	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 9)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHX \| pdb_00005phx	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 10)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHY \| pdb_00005phy	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 11)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PHZ \| pdb_00005phz	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 12)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PI0 \| pdb_00005pi0	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 13)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PI1 \| pdb_00005pi1	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 14)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PI2 \| pdb_00005pi2	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 15)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PI3 \| pdb_00005pi3	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 16)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

Explore in 3D

5PI4 \| pdb_00005pi4	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 17)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PI5 \| pdb_00005pi5	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 18)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PI6 \| pdb_00005pi6	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 19)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

Explore in 3D

5PI7 \| pdb_00005pi7	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 20)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

Explore in 3D

5PI8 \| pdb_00005pi8	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 21)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

Explore in 3D

5PI9 \| pdb_00005pi9	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 22)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PIA \| pdb_00005pia	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 23)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PIB \| pdb_00005pib	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 24)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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5PIC \| pdb_00005pic	Download File View File

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 25)

Pearce, N.M., Krojer, T., Talon, R., Bradley, A.R., Fairhead, M., Sethi, R., Wright, N., MacLean, E., Collins, P., Brandao-Neto, J., Douangamath, A., Renjie, Z., Dias, A., Vollmar, M., Ng, J., Szykowska, A., Burgess-Brown, N., Brennan, P.E., Cox, O., Oppermann, U., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F.

(2017) Nat Commun 8: 15123-15123

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	EDO, MG, NI, OGA, SO4, ZN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5PHO | pdb_00005pho

5PHP | pdb_00005php

5PHQ | pdb_00005phq

5PHR | pdb_00005phr

5PHS | pdb_00005phs

5PHT | pdb_00005pht

5PHU | pdb_00005phu

5PHV | pdb_00005phv

5PHW | pdb_00005phw

5PHX | pdb_00005phx

5PHY | pdb_00005phy

5PHZ | pdb_00005phz

5PI0 | pdb_00005pi0

5PI1 | pdb_00005pi1

5PI2 | pdb_00005pi2

5PI3 | pdb_00005pi3

5PI4 | pdb_00005pi4

5PI5 | pdb_00005pi5

5PI6 | pdb_00005pi6

5PI7 | pdb_00005pi7

5PI8 | pdb_00005pi8

5PI9 | pdb_00005pi9

5PIA | pdb_00005pia

5PIB | pdb_00005pib

5PIC | pdb_00005pic