8Z9A

Cryo-EM structure of the insect olfactory receptor OR5-Orco heterocomplex from Acyrthosiphon pisum bound with geranyl acetate


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for odorant recognition of the insect odorant receptor OR-Orco heterocomplex.

Wang, Y.Qiu, L.Wang, B.Guan, Z.Dong, Z.Zhang, J.Cao, S.Yang, L.Wang, B.Gong, Z.Zhang, L.Ma, W.Liu, Z.Zhang, D.Wang, G.Yin, P.

(2024) Science 384: 1453-1460

  • DOI: https://doi.org/10.1126/science.adn6881
  • Primary Citation of Related Structures:  
    8Z9A, 8Z9Z

  • PubMed Abstract: 

    Insects detect and discriminate a diverse array of chemicals using odorant receptors (ORs), which are ligand-gated ion channels comprising a divergent odorant-sensing OR and a conserved odorant receptor co-receptor (Orco). In this work, we report structures of the Ap OR5-Orco heterocomplex from the pea aphid Acyrthosiphon pisum alone and bound to its known activating ligand, geranyl acetate. In these structures, three Ap Orco subunits serve as scaffold components that cannot bind the ligand and remain relatively unchanged. Upon ligand binding, the pore-forming helix S7b of Ap OR5 shifts outward from the central pore axis, causing an asymmetrical pore opening for ion influx. Our study provides insights into odorant recognition and channel gating of the OR-Orco heterocomplex and offers structural resources to support development of innovative insecticides and repellents for pest control.


  • Organizational Affiliation

    Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Synthetic Biology Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Odorant receptor, ApisOrco
A, B, C
463Acyrthosiphon pisumMutation(s): 0 
Gene Names: Orco
Membrane Entity: Yes 
UniProt
Find proteins for A0A1S6J137 (Acyrthosiphon pisum)
Explore A0A1S6J137 
Go to UniProtKB:  A0A1S6J137
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S6J137
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Odorant receptor, ApisOR5367Acyrthosiphon pisumMutation(s): 0 
Gene Names: OR5
Membrane Entity: Yes 
UniProt
Find proteins for A0A1S6J146 (Acyrthosiphon pisum)
Explore A0A1S6J146 
Go to UniProtKB:  A0A1S6J146
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1S6J146
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PC1 (Subject of Investigation/LOI)
Query on PC1

Download Ideal Coordinates CCD File 
E [auth A]
F [auth A]
G [auth B]
H [auth B]
I [auth B]
E [auth A],
F [auth A],
G [auth B],
H [auth B],
I [auth B],
J [auth C],
K [auth D]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
SOU (Subject of Investigation/LOI)
Query on SOU

Download Ideal Coordinates CCD File 
L [auth D][(2E)-3,7-dimethylocta-2,6-dienyl] ethanoate
C12 H20 O2
HIGQPQRQIQDZMP-DHZHZOJOSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release
  • Version 1.1: 2024-07-10
    Changes: Data collection, Database references