Structure basis of translation regulation by YchF bound to ribosome
Li, X., Yu, T., Li, Q., Zeng, F.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L2 | 273 | Escherichia coli | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P60422 (Escherichia coli (strain K12)) Explore P60422  Go to UniProtKB:  P60422 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60422 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L3 | 209 | Escherichia coli | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P60438 (Escherichia coli (strain K12)) Explore P60438  Go to UniProtKB:  P60438 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60438 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L4 | 201 | Escherichia coli | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P60723 (Escherichia coli (strain K12)) Explore P60723  Go to UniProtKB:  P60723 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60723 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L5 | 179 | Escherichia coli | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P62399 (Escherichia coli (strain K12)) Explore P62399  Go to UniProtKB:  P62399 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62399 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L6 | 177 | Escherichia coli | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P0AG55 (Escherichia coli (strain K12)) Explore P0AG55  Go to UniProtKB:  P0AG55 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG55 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L9 | 149 | Escherichia coli | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P0A7R1 (Escherichia coli (strain K12)) Explore P0A7R1  Go to UniProtKB:  P0A7R1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7R1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL11 | I [auth J] | 142 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7J7 (Escherichia coli (strain K12)) Explore P0A7J7  Go to UniProtKB:  P0A7J7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7J7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L13 | J [auth K] | 142 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0AA10 (Escherichia coli (strain K12)) Explore P0AA10  Go to UniProtKB:  P0AA10 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AA10 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L14 | K [auth L] | 123 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0ADY3 (Escherichia coli (strain K12)) Explore P0ADY3  Go to UniProtKB:  P0ADY3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ADY3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L15 | L [auth M] | 144 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P02413 (Escherichia coli (strain K12)) Explore P02413  Go to UniProtKB:  P02413 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02413 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L16 | M [auth N] | 136 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0ADY7 (Escherichia coli (strain K12)) Explore P0ADY7  Go to UniProtKB:  P0ADY7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ADY7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L17 | N [auth O] | 127 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0AG44 (Escherichia coli (strain K12)) Explore P0AG44  Go to UniProtKB:  P0AG44 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG44 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L18 | O [auth P] | 117 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0C018 (Escherichia coli (strain K12)) Explore P0C018  Go to UniProtKB:  P0C018 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0C018 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L19 | P [auth Q] | 115 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7K6 (Escherichia coli (strain K12)) Explore P0A7K6  Go to UniProtKB:  P0A7K6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7K6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L20 | Q [auth R] | 118 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7L3 (Escherichia coli (strain K12)) Explore P0A7L3  Go to UniProtKB:  P0A7L3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7L3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L21 | R [auth S] | 103 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0AG48 (Escherichia coli (strain K12)) Explore P0AG48  Go to UniProtKB:  P0AG48 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG48 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L22 | S [auth T] | 110 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P61175 (Escherichia coli (strain K12)) Explore P61175  Go to UniProtKB:  P61175 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61175 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L23 | T [auth U] | 100 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0ADZ0 (Escherichia coli (strain K12)) Explore P0ADZ0  Go to UniProtKB:  P0ADZ0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ADZ0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L24 | U [auth V] | 104 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P60624 (Escherichia coli (strain K12)) Explore P60624  Go to UniProtKB:  P60624 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60624 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L25 | V [auth W] | 94 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P68919 (Escherichia coli (strain K12)) Explore P68919  Go to UniProtKB:  P68919 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68919 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L27 | W [auth X] | 85 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7L8 (Escherichia coli (strain K12)) Explore P0A7L8  Go to UniProtKB:  P0A7L8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7L8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L28 | X [auth Y] | 78 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7M2 (Escherichia coli (strain K12)) Explore P0A7M2  Go to UniProtKB:  P0A7M2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7M2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L29 | Y [auth Z] | 63 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7M6 (Escherichia coli (strain K12)) Explore P0A7M6  Go to UniProtKB:  P0A7M6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7M6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L30 | Z [auth 0] | 59 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0AG51 (Escherichia coli (strain K12)) Explore P0AG51  Go to UniProtKB:  P0AG51 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG51 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L32 | AA [auth 1] | 57 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7N4 (Escherichia coli (strain K12)) Explore P0A7N4  Go to UniProtKB:  P0A7N4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7N4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L33 | BA [auth 2] | 55 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7N9 (Escherichia coli (strain K12)) Explore P0A7N9  Go to UniProtKB:  P0A7N9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7N9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 29 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L34 | CA [auth 3] | 46 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7P5 (Escherichia coli (strain K12)) Explore P0A7P5  Go to UniProtKB:  P0A7P5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7P5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 30 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L35 | DA [auth 4] | 65 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7Q1 (Escherichia coli (strain K12)) Explore P0A7Q1  Go to UniProtKB:  P0A7Q1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Q1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 31 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L36 | EA [auth 5] | 38 | Escherichia coli | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0A7Q6 (Escherichia coli (strain K12)) Explore P0A7Q6  Go to UniProtKB:  P0A7Q6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Q6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 32 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosome-binding ATPase YchF | FA [auth y] | 379 | Escherichia coli | Mutation(s): 1  Gene Names: ychF | |
UniProt | |||||
Find proteins for P0ABU2 (Escherichia coli (strain K12)) Explore P0ABU2  Go to UniProtKB:  P0ABU2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ABU2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
23S rRNA | 2,904 | Escherichia coli | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5S rRNA | 118 | Escherichia coli | |||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | GE [auth 5] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | AB [auth A] AC [auth A] AD [auth A] AE [auth A] BB [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China (NSFC) | China | 32171200 |
Guangdong Basic and Applied Basic Research Foundation | China | 2021A1515010805 |
Shenzhen Science and Technology Program | China | JCYJ20220530115210023 |