8V0I

The structure of the native cardiac thin filament troponin core in Ca2+-bound fully activated state 2 from the lower strand

  • Classification: MOTOR PROTEIN
  • Organism(s): Sus scrofa
  • Mutation(s): No 

  • Deposited: 2023-11-17 Released: 2024-03-06 
  • Deposition Author(s): Galkin, V.E., Risi, C.M.
  • Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Troponin Structural Dynamics in the Native Cardiac Thin Filament Revealed by Cryo Electron Microscopy.

Risi, C.M.Belknap, B.Atherton, J.Coscarella, I.L.White, H.D.Bryant Chase, P.Pinto, J.R.Galkin, V.E.

(2024) J Mol Biol 436: 168498-168498

  • DOI: https://doi.org/10.1016/j.jmb.2024.168498
  • Primary Citation of Related Structures:  
    8UWW, 8UWX, 8UWY, 8UYD, 8UZ5, 8UZ6, 8UZX, 8UZY, 8V01, 8V0I, 8V0K, 8V0Y

  • PubMed Abstract: 

    Cardiac muscle contraction occurs due to repetitive interactions between myosin thick and actin thin filaments (TF) regulated by Ca 2+ levels, active cross-bridges, and cardiac myosin-binding protein C (cMyBP-C). The cardiac TF (cTF) has two nonequivalent strands, each comprised of actin, tropomyosin (Tm), and troponin (Tn). Tn shifts Tm away from myosin-binding sites on actin at elevated Ca 2+ levels to allow formation of force-producing actomyosin cross-bridges. The Tn complex is comprised of three distinct polypeptides - Ca 2+ -binding TnC, inhibitory TnI, and Tm-binding TnT. The molecular mechanism of their collective action is unresolved due to lack of comprehensive structural information on Tn region of cTF. C1 domain of cMyBP-C activates cTF in the absence of Ca 2+ to the same extent as rigor myosin. Here we used cryo-EM of native cTFs to show that cTF Tn core adopts multiple structural conformations at high and low Ca 2+ levels and that the two strands are structurally distinct. At high Ca 2+ levels, cTF is not entirely activated by Ca 2+ but exists in either partially or fully activated state. Complete dissociation of TnI C-terminus is required for full activation. In presence of cMyBP-C C1 domain, Tn core adopts a fully activated conformation, even in absence of Ca 2+ . Our data provide a structural description for the requirement of myosin to fully activate cTFs and explain increased affinity of TnC to Ca 2+ in presence of active cross-bridges. We suggest that allosteric coupling between Tn subunits and Tm is required to control actomyosin interactions.


  • Organizational Affiliation

    Department of Physiological Sciences, Eastern Virginia Medical School, Norfolk, VA 23507, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Actin, alpha cardiac muscle 1
A, B
377Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8W4F696 (Sus scrofa)
Explore A0A8W4F696 
Go to UniProtKB:  A0A8W4F696
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UniProt GroupA0A8W4F696
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Troponin C, slow skeletal and cardiac muscles161Sus scrofaMutation(s): 0 
UniProt
Find proteins for P63317 (Sus scrofa)
Explore P63317 
Go to UniProtKB:  P63317
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UniProt GroupP63317
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Troponin I, cardiac muscle211Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1V520 (Sus scrofa)
Explore A0A4X1V520 
Go to UniProtKB:  A0A4X1V520
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UniProt GroupA0A4X1V520
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Troponin T2, cardiac type285Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A5G2Q8N0 (Sus scrofa)
Explore A0A5G2Q8N0 
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UniProt GroupA0A5G2Q8N0
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tropomyosin alpha-1 chain
F, G
284Sus scrofaMutation(s): 0 
UniProt
Find proteins for P42639 (Sus scrofa)
Explore P42639 
Go to UniProtKB:  P42639
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UniProt GroupP42639
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download Ideal Coordinates CCD File 
H [auth A],
J [auth B]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
L [auth C],
M [auth C],
N [auth C]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
I [auth A],
K [auth B]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR01HL160966
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States1R01HL140925

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release
  • Version 1.1: 2024-03-13
    Changes: Database references