tRNA 2-phosphotransferase (Tpt1) from Pyrococcus horikoshii in complex with 5'-AMP
Jacewicz, A., Dantuluri, S., Shuman, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Probable RNA 2'-phosphotransferase | 177 | Pyrococcus horikoshii OT3 | Mutation(s): 1  Gene Names: kptA, PH0160 EC: 2.7.1 | ||
UniProt | |||||
Find proteins for O57899 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O57899  Go to UniProtKB:  O57899 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O57899 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AMP (Subject of Investigation/LOI) Query on AMP | B [auth A], C [auth A] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N | |||
K Query on K | D [auth A], E [auth A], F [auth A], G [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
CL Query on CL | H [auth A] I [auth A] J [auth A] K [auth A] L [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | O [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 38.937 | α = 90 |
b = 43.665 | β = 90 |
c = 122.861 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35-GM126945 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | P30-GM124165 |
Department of Energy (DOE, United States) | United States | DE-AC02-06CH11357 |
Other government | United States | HEI-S10OD021527 |