MUT-7 a conserved exoribonuclease functioning in small RNA biogenesis
Falk, S., Busetto, V.To be published.
Experimental Data Snapshot
Starting Model: in silico
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Exonuclease mut-7 | 272 | Caenorhabditis elegans | Mutation(s): 0  Gene Names: mut-7 | ||
UniProt | |||||
Find proteins for P34607 (Caenorhabditis elegans) Explore P34607  Go to UniProtKB:  P34607 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P34607 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
SH2 domain-containing protein | 251 | Caenorhabditis elegans | Mutation(s): 0  Gene Names: rde-2 | ||
UniProt | |||||
Find proteins for Q19672 (Caenorhabditis elegans) Explore Q19672  Go to UniProtKB:  Q19672 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q19672 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | D [auth A], E [auth A], F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 145.089 | α = 90 |
b = 59.053 | β = 119.8 |
c = 88.161 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | phasing |
PHENIX | refinement |
PDB-REDO | refinement |
pointless | data scaling |
XDS | data reduction |
Funding Organization | Location | Grant Number |
---|---|---|
H2020 Marie Curie Actions of the European Commission | European Union | FA743031 |