8H69

Cryo-EM structure of influenza RNA polymerase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

An intermediate state allows influenza polymerase to switch smoothly between transcription and replication cycles.

Li, H.Wu, Y.Li, M.Guo, L.Gao, Y.Wang, Q.Zhang, J.Lai, Z.Zhang, X.Zhu, L.Lan, P.Rao, Z.Liu, Y.Liang, H.

(2023) Nat Struct Mol Biol 30: 1183-1192

  • DOI: https://doi.org/10.1038/s41594-023-01043-2
  • Primary Citation of Related Structures:  
    8H69

  • PubMed Abstract: 

    Influenza polymerase (FluPol) transcribes viral mRNA at the beginning of the viral life cycle and initiates genome replication after viral protein synthesis. However, it remains poorly understood how FluPol switches between its transcription and replication states, especially given that the structural bases of these two functions are fundamentally different. Here we propose a mechanism by which FluPol achieves functional switching between these two states through a previously unstudied conformation, termed an 'intermediate state'. Using cryo-electron microscopy, we obtained a structure of the intermediate state of H5N1 FluPol at 3.7 Å, which is characterized by a blocked cap-binding domain and a contracted core region. Structural analysis results suggest that the intermediate state may allow FluPol to transition smoothly into either the transcription or replication state. Furthermore, we show that the formation of the intermediate state is required for both the transcription and replication activities of FluPol, leading us to conclude that the transcription and replication cycles of FluPol are regulated via this intermediate state.


  • Organizational Affiliation

    Shenzhen Key Laboratory for Systems Medicine in Inflammatory Diseases, School of Medicine, Shenzhen Campus of Sun Yat-Sen University, Sun Yat-Sen University, Shenzhen, China.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Polymerase acidic proteinC [auth A]716Influenza A virus (A/goose/Guangdong/1/1996(H5N1))Mutation(s): 0 
Gene Names: PA
UniProt
Find proteins for Q9Q0U9 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd))
Explore Q9Q0U9 
Go to UniProtKB:  Q9Q0U9
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UniProt GroupQ9Q0U9
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymerase catalytic subunitD [auth B]757Influenza A virus (A/goose/Guangdong/1/1996(H5N1))Mutation(s): 0 
Gene Names: PB1
UniProt
Find proteins for Q9Q0V0 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd))
Explore Q9Q0V0 
Go to UniProtKB:  Q9Q0V0
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UniProt GroupQ9Q0V0
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Polymerase basic protein 2E [auth C]759Influenza A virus (A/goose/Guangdong/1/1996(H5N1))Mutation(s): 0 
Gene Names: PB2
UniProt
Find proteins for Q9Q0V1 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd))
Explore Q9Q0V1 
Go to UniProtKB:  Q9Q0V1
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UniProt GroupQ9Q0V1
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  • Reference Sequence

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Entity ID: 1
MoleculeChains LengthOrganismImage
RNA (5'-R(*UP*AP*AP*AP*CP*UP*CP*CP*UP*GP*CP*UP*UP*UP*UP*GP*CP*U)-3')A [auth 3]18Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
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Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(P*AP*GP*UP*AP*GP*AP*AP*AP*CP*AP*AP*GP*GP*AP*GP*UP*UP*UP*U)-3')B [auth 5]19Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31530015
National Natural Science Foundation of China (NSFC)China31870739
National Natural Science Foundation of China (NSFC)China82071346

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-28
    Type: Initial release
  • Version 1.1: 2023-08-02
    Changes: Database references
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references
  • Version 1.3: 2023-11-15
    Changes: Source and taxonomy