7QQK

TIR-SAVED effector bound to cA3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cyclic nucleotide-induced helical structure activates a TIR immune effector.

Hogrel, G.Guild, A.Graham, S.Rickman, H.Gruschow, S.Bertrand, Q.Spagnolo, L.White, M.F.

(2022) Nature 608: 808-812

  • DOI: https://doi.org/10.1038/s41586-022-05070-9
  • Primary Citation of Related Structures:  
    7QQK

  • PubMed Abstract: 

    Cyclic nucleotide signalling is a key component of antiviral defence in all domains of life. Viral detection activates a nucleotide cyclase to generate a second messenger, resulting in activation of effector proteins. This is exemplified by the metazoan cGAS-STING innate immunity pathway 1 , which originated in bacteria 2 . These defence systems require a sensor domain to bind the cyclic nucleotide and are often coupled with an effector domain that, when activated, causes cell death by destroying essential biomolecules 3 . One example is the Toll/interleukin-1 receptor (TIR) domain, which degrades the essential cofactor NAD + when activated in response to infection in plants and bacteria 2,4,5 or during programmed nerve cell death 6 . Here we show that a bacterial antiviral defence system generates a cyclic tri-adenylate that binds to a TIR-SAVED effector, acting as the 'glue' to allow assembly of an extended superhelical solenoid structure. Adjacent TIR subunits interact to organize and complete a composite active site, allowing NAD + degradation. Activation requires extended filament formation, both in vitro and in vivo. Our study highlights an example of large-scale molecular assembly controlled by cyclic nucleotides and reveals key details of the mechanism of TIR enzyme activation.


  • Organizational Affiliation

    School of Biology, University of St Andrews, St Andrews, UK.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TIR_SAVED fusion protein
A, B, C, D
433Microbacterium terraeMutation(s): 0 
Gene Names: RS81_00402
UniProt
Find proteins for A0A0M2HE71 (Microbacterium terrae)
Explore A0A0M2HE71 
Go to UniProtKB:  A0A0M2HE71
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0M2HE71
Sequence Annotations
Expand
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(P*AP*AP*A)-3')
E, F, G, H
3Microbacterium terrae
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T004789
European Research Council (ERC)United Kingdom101018608
Medical Research Council (MRC, United Kingdom)United KingdomMC_PC_17135

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-15
    Type: Initial release
  • Version 1.1: 2022-08-31
    Changes: Database references
  • Version 1.2: 2022-09-07
    Changes: Database references