Download MendeleyDependence of crystallographic atomic displacement factors on temperature (25-150 K) for complexes of horse liver alcohol dehydrogenases
Plapp, B.V., Gakhar, L., Subramanian, R.(2022) Acta Crystallogr D Biol Crystallogr D78: 1221-1234
7UEJ
horse liver alcohol dehydrogenase with NAD and pentafluorobenzyl alcohol at 150 K
- PDB DOI: https://doi.org/10.2210/pdb7UEJ/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Equus caballus
- Mutation(s): No
- Deposited: 2022-03-21 Released: 2022-03-30
- Funding Organization(s): National Institutes of Health/National Institute on Alcohol Abuse and Alcoholism (NIH/NIAAA), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.153
- R-Value Work: 0.129
- R-Value Observed: 0.129
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alcohol dehydrogenase E chain | 374 | Equus caballus | Mutation(s): 0 EC: 1.1.1.1 |  | |
UniProt | |||||
Find proteins for P00327 (Equus caballus) Explore P00327 Go to UniProtKB: P00327 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00327 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAJ (Subject of Investigation/LOI) Query on NAJ | E [auth A], L [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| PFB (Subject of Investigation/LOI) Query on PFB | F [auth A], M [auth B] | 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL C7 H3 F5 O PGJYYCIOYBZTPU-UHFFFAOYSA-N |  | ||
| MRD Query on MRD | G [auth A], H [auth A], I [auth A], N [auth B] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A], J [auth B], K [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 Å
- R-Value Free: 0.153
- R-Value Work: 0.129
- R-Value Observed: 0.129
- Space Group: P 1
- Diffraction Data: https://doi.org/10.15785/SBGRID/898
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.38 | α = 91.86 |
| b = 51.33 | β = 103.05 |
| c = 92.63 | γ = 110.14 |
| Software Name | Purpose |
|---|---|
| d*TREK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| d*TREK | data reduction |
| O | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-03-30 Deposition Author(s): Plapp, B.V., Gakhar, L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute on Alcohol Abuse and Alcoholism (NIH/NIAAA) | United States | AA00279 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM078446 |
Revision History (Full details and data files)
- Version 1.0: 2022-03-30
Type: Initial release - Version 1.1: 2022-10-12
Changes: Database references - Version 1.2: 2023-10-18
Changes: Data collection, Refinement description
