6UVU

Crystal structure of the AntR antimony-specific transcriptional repressor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.224 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history


Literature

Functional and structural characterization of AntR, an Sb(III) responsive transcriptional repressor.

Viswanathan, T.Chen, J.Wu, M.An, L.Kandavelu, P.Sankaran, B.Radhakrishnan, M.Li, M.Rosen, B.P.

(2021) Mol Microbiol 116: 427-437

  • DOI: https://doi.org/10.1111/mmi.14721
  • Primary Citation of Related Structures:  
    6UVU

  • PubMed Abstract: 

    The ant operon of the antimony-mining bacterium Comamonas testosterone JL40 confers resistance to Sb(III). The operon is transcriptionally regulated by the product of the first gene in the operon, antR. AntR is a member of ArsR/SmtB family of metal/metalloid-responsive repressors resistance. We purified and characterized C. testosterone AntR and demonstrated that it responds to metalloids in the order Sb(III) = methylarsenite (MAs(III) >> As(III)). The protein was crystallized, and the structure was solved at 2.1 Å resolution. The homodimeric structure of AntR adopts a classical ArsR/SmtB topology architecture. The protein has five cysteine residues, of which Cys103 a from one monomer and Cys113 b from the other monomer, are proposed to form one Sb(III) binding site, and Cys113 a and Cys103 b forming a second binding site. This is the first report of the structure and binding properties of a transcriptional repressor with high selectivity for environmental antimony.


  • Organizational Affiliation

    Department of Cellular Biology and Pharmacology, Herbert Wertheim College of Medicine, Florida International University, Miami, FL, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ArsR family transcriptional regulator
A, B
124Comamonas testosteroniMutation(s): 0 
Gene Names: P353_26355
UniProt
Find proteins for A0A096F4H2 (Comamonas testosteroni)
Explore A0A096F4H2 
Go to UniProtKB:  A0A096F4H2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A096F4H2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.224 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.69α = 90
b = 58.51β = 118.28
c = 53.49γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
iMOSFLMdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM055425

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-04
    Type: Initial release
  • Version 1.1: 2021-04-14
    Changes: Database references
  • Version 1.2: 2021-09-08
    Changes: Database references
  • Version 1.3: 2023-10-11
    Changes: Data collection, Refinement description