Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation
Kisiala, M., Kowalska, M., Pastor, M., Korza, H., Czapinska, H., Bochtler, M.(2020) Nucleic Acids Res 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2020) Nucleic Acids Res 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Type II site-specific deoxyribonuclease | 238 | Nostoc sp. PCC 7120 = FACHB-418 | Mutation(s): 0  Gene Names: alr0933 | ||
UniProt | |||||
Find proteins for Q8YYB7 (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)) Explore Q8YYB7  Go to UniProtKB:  Q8YYB7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8YYB7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(P*GP*UP*AP*GP*GP*AP*CP*CP*AP*UP*G)-3') | 11 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*CP*CP*AP*TP*GP*GP*TP*CP*CP*TP*A)-3') | 11 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 37.68 | α = 90 |
b = 104.05 | β = 93.27 |
c = 78.29 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
SHELXDE | phasing |
ARP/wARP | model building |
Funding Organization | Location | Grant Number |
---|---|---|
Poland | UMO-2011/02/A/NZ1/00052 | |
Poland | UMO-2014/13/B/NZ1/03991 | |
Poland | UMO-2014/14/M/NZ5/00558 | |
Poland | 0295/B/PO1/2008/34 | |
Poland | N N301 425038 | |
Poland | N N301 028 934 |